Data mining tools for biological sequences

H Liu, L Wong - Journal of bioinformatics and computational biology, 2003 - World Scientific
We describe a methodology, as well as some related data mining tools, for analyzing
sequence data. The methodology comprises three steps:(a) generating candidate features …

Classifying affective states using thermal infrared imaging of the human face

BR Nhan, T Chau - IEEE Transactions on Biomedical …, 2009 - ieeexplore.ieee.org
In this paper, time, frequency, and time-frequency features derived from thermal infrared
data are used to discriminate between self-reported affective states of an individual in …

Automatic single-trial discrimination of mental arithmetic, mental singing and the no-control state from prefrontal activity: toward a three-state NIRS-BCI

SD Power, A Kushki, T Chau - BMC research notes, 2012 - Springer
Background Near-infrared spectroscopy (NIRS) is an optical imaging technology that has
recently been investigated for use in a safe, non-invasive brain-computer interface (BCI) for …

DNA-Prot: identification of DNA binding proteins from protein sequence information using random forest

KK Kumar, G Pugalenthi… - Journal of Biomolecular …, 2009 - Taylor & Francis
DNA-binding proteins (DNABPs) are important for various cellular processes, such as
transcriptional regulation, recombination, replication, repair, and DNA modification. So far …

Toward more intuitive brain–computer interfacing: classification of binary covert intentions using functional near-infrared spectroscopy

HJ Hwang, H Choi, JY Kim, WD Chang… - … of biomedical optics, 2016 - spiedigitallibrary.org
In traditional brain–computer interface (BCI) studies, binary communication systems have
generally been implemented using two mental tasks arbitrarily assigned to “yes” or “no” …

From shallow to deep: some lessons learned from application of machine learning for recognition of functional genomic elements in human genome

B Jankovic, T Gojobori - Human Genomics, 2022 - Springer
Identification of genomic signals as indicators for functional genomic elements is one of the
areas that received early and widespread application of machine learning methods. With …

Markov encoding for detecting signals in genomic sequences

JC Rajapakse, LS Ho - IEEE/ACM Transactions on …, 2005 - ieeexplore.ieee.org
We present a technique to encode the inputs to neural networks for the detection of signals
in genomic sequences. The encoding is based on lower-order Markov models which …

Translation initiation site prediction on a genomic scale: beauty in simplicity

Y Saeys, T Abeel, S Degroeve, Y Van de Peer - Bioinformatics, 2007 - academic.oup.com
Motivation: The correct identification of translation initiation sites (TIS) remains a challenging
problem for computational methods that automatically try to solve this problem. Furthermore …

[PDF][PDF] Modern applications of machine learning

G Tzanis, I Katakis, I Partalas, I Vlahavas - Proceedings of the 1st Annual …, 2006 - Citeseer
A cognitive system tries to understand the concepts of its environment by using a simplified
interpretation of this environment called model. The procedure of constructing such a model …

Bioinformatic analyses of mammalian 5'-UTR sequence properties of mRNAs predicts alternative translation initiation sites

JL Wegrzyn, TM Drudge, F Valafar, V Hook - BMC bioinformatics, 2008 - Springer
Background Utilization of alternative initiation sites for protein translation directed by non-
AUG codons in mammalian mRNAs is observed with increasing frequency. Alternative …