[HTML][HTML] Clinical concept extraction: a methodology review

S Fu, D Chen, H He, S Liu, S Moon, KJ Peterson… - Journal of biomedical …, 2020 - Elsevier
Background Concept extraction, a subdomain of natural language processing (NLP) with a
focus on extracting concepts of interest, has been adopted to computationally extract clinical …

Extracting information from textual documents in the electronic health record: a review of recent research

SM Meystre, GK Savova… - Yearbook of medical …, 2008 - thieme-connect.com
Objectives We examine recent published research on the extraction of information from
textual documents in the Electronic Health Record (EHR). Methods Literature review of the …

Identifying patient smoking status from medical discharge records

Ö Uzuner, I Goldstein, Y Luo… - Journal of the American …, 2008 - academic.oup.com
The authors organized a Natural Language Processing (NLP) challenge on automatically
determining the smoking status of patients from information found in their discharge records …

Model tuning or prompt Tuning? a study of large language models for clinical concept and relation extraction

C Peng, XI Yang, KE Smith, Z Yu, A Chen, J Bian… - Journal of biomedical …, 2024 - Elsevier
Objective To develop soft prompt-based learning architecture for large language models
(LLMs), examine prompt-tuning using frozen/unfrozen LLMs, and assess their abilities in …

Automatic identification of heart failure diagnostic criteria, using text analysis of clinical notes from electronic health records

RJ Byrd, SR Steinhubl, J Sun, S Ebadollahi… - International journal of …, 2014 - Elsevier
Abstract Objective Early detection of Heart Failure (HF) could mitigate the enormous
individual and societal burden from this disease. Clinical detection is based, in part, on …

ICD-9 tobacco use codes are effective identifiers of smoking status

LK Wiley, A Shah, H Xu, WS Bush - Journal of the American …, 2013 - academic.oup.com
Objective To evaluate the validity of, characterize the usage of, and propose potential
research applications for International Classification of Diseases, Ninth Revision (ICD-9) …

Using machine learning for concept extraction on clinical documents from multiple data sources

M Torii, K Wagholikar, H Liu - Journal of the American Medical …, 2011 - academic.oup.com
Objective Concept extraction is a process to identify phrases referring to concepts of
interests in unstructured text. It is a critical component in automated text processing. We …

Machine learning applications in tobacco research: a scoping review

R Fu, A Kundu, N Mitsakakis… - Tobacco …, 2023 - tobaccocontrol.bmj.com
Objective Identify and review the body of tobacco research literature that self-identified as
using machine learning (ML) in the analysis. Data sources MEDLINE, EMABSE, PubMed …

Extracting diagnoses and investigation results from unstructured text in electronic health records by semi-supervised machine learning

Z Wang, AD Shah, AR Tate, S Denaxas… - PLoS …, 2012 - journals.plos.org
Background Electronic health records are invaluable for medical research, but much of the
information is recorded as unstructured free text which is time-consuming to review …

N-gram support vector machines for scalable procedure and diagnosis classification, with applications to clinical free text data from the intensive care unit

BJ Marafino, JM Davies, NS Bardach… - Journal of the …, 2014 - academic.oup.com
Background Existing risk adjustment models for intensive care unit (ICU) outcomes rely on
manual abstraction of patient-level predictors from medical charts. Developing an automated …