Advances in nucleic acid-targeted therapies for cardiovascular disease prevention

U Makhmudova, E Steinhagen-Thiessen… - Cardiovascular …, 2024 - academic.oup.com
Nucleic acid-based therapies are being rapidly developed for prevention and management
of cardiovascular diseases (CVD). Remarkable advancements have been achieved in the …

SLKB: synthetic lethality knowledge base

B Gökbağ, S Tang, K Fan, L Cheng, L Yu… - Nucleic Acids …, 2024 - academic.oup.com
Emerging CRISPR–Cas9 technology permits synthetic lethality (SL) screening of large
number of gene pairs from gene combination double knockout (CDKO) experiments …

Exploring retinal degenerative diseases through CRISPR-based screening

R Li, F Yang, B Chu, D Kong, J Hu, H Qian - Molecular Biology Reports, 2024 - Springer
The CRISPR (Clustered regularly interspaced short palindromic repeats)/Cas9 (CRISPR-
associated protein9) system has emerged as a powerful genetic tool, gaining global …

Synthetic lethal connectivity and graph transformer improve synthetic lethality prediction

K Fan, B Gökbağ, S Tang, S Li, Y Huang… - Briefings in …, 2024 - academic.oup.com
Synthetic lethality (SL) has shown great promise for the discovery of novel targets in cancer.
CRISPR double-knockout (CDKO) technologies can only screen several hundred genes …

Utilizing Computer Vision for Continuous Monitoring of Vaccine Side Effects in Experimental Mice

C Li, S Shao, W Mikason, R Lin, Y Liu - arXiv preprint arXiv:2404.03121, 2024 - arxiv.org
The demand for improved efficiency and accuracy in vaccine safety assessments is
increasing. Here, we explore the application of computer vision technologies to automate …

Sensitive detection of synthetic response to cancer immunotherapy driven by gene paralog pairs

C Dong, F Zhang, E He, P Ren, N Verma, X Zhu… - …, 2024 - pmc.ncbi.nlm.nih.gov
Emerging immunotherapies such as immune checkpoint blockade (ICB) and chimeric
antigen receptor T-cell (CAR-T) therapy have revolutionized cancer treatment and have …

Identifying Novel Therapeutic Targets for Overcoming TNBC Chemo Resistance Through Comprehensive CRISPR-Cas9 Genome Screening

S Shao, S Li, S Tang, K Fan, L Li - bioRxiv, 2024 - biorxiv.org
Triple-negative breast cancer (TNBC) represents 15-20% of cases but disproportionately
contributes to 35% of breast cancer deaths. Chemotherapy resistance remains a significant …

CRISPR Double Knockout Library Reveals Synthetic Lethal Gene Pairs in Triple-Negative Breast Cancer

S Shao, S Li, S Tang, K Fan, L Li - bioRxiv, 2024 - biorxiv.org
Synthetic lethality, a genetic interaction involving two or more genes whose combined loss
results in cell death, has emerged as a promising strategy for targeted cancer therapy. By …

pgMAP: a pipeline to enable guide RNA read mapping from dual-targeting CRISPR screens

PCR Parrish, DJ Groso, JD Thomas, RK Bradley… - arXiv preprint arXiv …, 2023 - arxiv.org
We developed pgMAP, an analysis pipeline to map gRNA sequencing reads from dual-
targeting CRISPR screens. pgMAP output includes a dual gRNA read counts table and …

Identifying Representative Cell Line Models for TNBC Chemotherapy Drug Resistance via Systems Biology and Bioinformatics

S Shao, L Li - bioRxiv, 2024 - biorxiv.org
Cancer cell lines, derived from tumors, have become essential tools in life science research
and are commonly employed as experimental model systems in cancer research. However …