Tutorial: practical considerations for tissue clearing and imaging

KR Weiss, FF Voigt, DP Shepherd, J Huisken - Nature protocols, 2021 - nature.com
Tissue clearing has become a powerful technique for studying anatomy and morphology at
scales ranging from entire organisms to subcellular features. With the recent proliferation of …

Hydrogel-tissue chemistry: principles and applications

V Gradinaru, J Treweek, K Overton… - Annual review of …, 2018 - annualreviews.org
Over the past five years, a rapidly developing experimental approach has enabled high-
resolution and high-content information retrieval from intact multicellular animal (metazoan) …

Intraclonal plasticity in mammary tumors revealed through large-scale single-cell resolution 3D imaging

AC Rios, BD Capaldo, F Vaillant, B Pal, R van Ineveld… - Cancer cell, 2019 - cell.com
Breast tumors are inherently heterogeneous, but the evolving cellular organization through
neoplastic progression is poorly understood. Here we report a rapid, large-scale single-cell …

Advances and perspectives in tissue clearing using CLARITY

KHR Jensen, RW Berg - Journal of Chemical Neuroanatomy, 2017 - Elsevier
CLARITY is a tissue clearing method, which enables immunostaining and imaging of large
volumes for 3D-reconstruction. The method was initially time-consuming, expensive and …

Optimization of GFP fluorescence preservation by a modified uDISCO clearing protocol

Y Li, J Xu, P Wan, T Yu, D Zhu - Frontiers in neuroanatomy, 2018 - frontiersin.org
Tissue optical clearing techniques provide alternative approaches for imaging large-volume
specimens. uDISCO, an organic-solvent-based method, stands out from the enormous array …

Experimental and computational methods for the study of cerebral organoids: a review

D Poli, C Magliaro, A Ahluwalia - Frontiers in neuroscience, 2019 - frontiersin.org
Cerebral (or brain) organoids derived from human cells have enormous potential as
physiologically relevant downscaled in vitro models of the human brain. In fact, these stem …

A modular framework for multi-scale tissue imaging and neuronal segmentation

S Cauzzo, E Bruno, D Boulet, P Nazac, M Basile… - Nature …, 2024 - nature.com
The development of robust tools for segmenting cellular and sub-cellular neuronal structures
lags behind the massive production of high-resolution 3D images of neurons in brain tissue …

[HTML][HTML] Advances in CLARITY‑based tissue clearing and imaging

H Du, P Hou, W Zhang, Q Li - Experimental and …, 2018 - spandidos-publications.com
CLARITY is a novel tissue clearing technique that transforms intact biological tissues into a
nanoporous hydrogel‑tissue hybrid, preserving anatomical structures, proteins and nucleic …

CLARITY increases sensitivity and specificity of fluorescence immunostaining in long-term archived human brain tissue

S Woelfle, D Deshpande, S Feldengut, H Braak… - BMC biology, 2023 - Springer
Background Post mortem human brain tissue is an essential resource to study cell types,
connectivity as well as subcellular structures down to the molecular setup of the central …

Quantitative analysis of metastatic breast cancer in mice using deep learning on cryo-image data

Y Liu, M Gargesha, M Qutaish, Z Zhou, P Qiao… - Scientific Reports, 2021 - nature.com
Cryo-imaging sections and images a whole mouse and provides~ 120-GBytes of
microscopic 3D color anatomy and fluorescence images, making fully manual analysis of …