Best practices on the differential expression analysis of multi-species RNA-seq
Advances in transcriptome sequencing allow for simultaneous interrogation of differentially
expressed genes from multiple species originating from a single RNA sample, termed dual …
expressed genes from multiple species originating from a single RNA sample, termed dual …
Broadening the definition of bacterial small RNAs: characteristics and mechanisms of action
MC Carrier, D Lalaouna, E Massé - Annual review of …, 2018 - annualreviews.org
The first report of trans-acting RNA-based regulation in bacterial cells dates back to 1984.
Subsequent studies in diverse bacteria unraveled shared properties of trans-acting small …
Subsequent studies in diverse bacteria unraveled shared properties of trans-acting small …
Nanopore sequencing of RNA and cDNA molecules in Escherichia coli
High-throughput sequencing dramatically changed our view of transcriptome architectures
and allowed for ground-breaking discoveries in RNA biology. Recently, sequencing of full …
and allowed for ground-breaking discoveries in RNA biology. Recently, sequencing of full …
Identification of the novel bacterial blight resistance gene Xa46(t) by mapping and expression analysis of the rice mutant H120
S Chen, C Wang, J Yang, B Chen, W Wang, J Su… - Scientific reports, 2020 - nature.com
Rice bacterial leaf blight is caused by Xanthomonas oryzae pv. oryzae (Xoo) and produces
substantial losses in rice yields. Resistance breeding is an effective method for controlling …
substantial losses in rice yields. Resistance breeding is an effective method for controlling …
Gene regulation and transcriptomics
Borrelia (Borreliella) burgdorferi, along with closely related species, is the etiologic agent of
Lyme disease. The spirochete subsists in an enzootic cycle that encompasses acquisition …
Lyme disease. The spirochete subsists in an enzootic cycle that encompasses acquisition …
Antibiotic persistence as a metabolic adaptation: stress, metabolism, the host, and new directions
Persistence is a phenomenon during which a small fraction of a total bacterial population
survives treatment with high concentrations of antibiotics for an extended period of time. In …
survives treatment with high concentrations of antibiotics for an extended period of time. In …
The core and accessory Hfq interactomes across Pseudomonas aeruginosa lineages
J Trouillon, K Han, I Attrée, S Lory - Nature Communications, 2022 - nature.com
The major RNA-binding protein Hfq interacts with mRNAs, either alone or together with
regulatory small noncoding RNAs (sRNAs), affecting mRNA translation and degradation in …
regulatory small noncoding RNAs (sRNAs), affecting mRNA translation and degradation in …
Macrophage heterogeneity in the immunopathogenesis of tuberculosis
Macrophages play a central role in tuberculosis, as the site of primary infection, inducers
and effectors of inflammation, innate and adaptive immunity, as well as mediators of tissue …
and effectors of inflammation, innate and adaptive immunity, as well as mediators of tissue …
Genome-Wide Transcription Start Site Mapping and Promoter Assignments to a Sigma Factor in the Human Enteropathogen Clostridioides difficile
The emerging human enteropathogen Clostridioides difficile is the main cause of diarrhea
associated with antibiotherapy. Regulatory pathways underlying the adaptive responses …
associated with antibiotherapy. Regulatory pathways underlying the adaptive responses …
Ultrahigh-throughput droplet microfluidic device for single-cell miRNA detection with isothermal amplification
Analysis of microRNA (miRNA), a pivotal primary regulator of fundamental cellular
processes, at the single-cell level is essential to elucidate regulated gene expression …
processes, at the single-cell level is essential to elucidate regulated gene expression …