Gene Loss, Pseudogenization in Plastomes of Genus Allium (Amaryllidaceae), and Putative Selection for Adaptation to Environmental Conditions

VA Scobeyeva, IV Artyushin, AA Krinitsina… - Frontiers in …, 2021 - frontiersin.org
Amaryllidaceae is a large family with more than 1,600 species, belonging to 75 genera. The
largest genus—Allium—is vast, comprising about a thousand species. Allium species (as …

A large intergenic spacer leads to the increase in genome size and sequential gene movement around IR/SC boundaries in the chloroplast genome of Adiantum …

X Gu, M Zhu, Y Su, T Wang - International Journal of Molecular Sciences, 2022 - mdpi.com
Expansion and contraction (ebb and flow events) of inverted repeat (IR) boundaries occur
and are generally considered to be major factors affecting chloroplast (cp) genome size …

Integrated analysis of three newly sequenced fern chloroplast genomes: Genome structure and comparative analysis

R Fan, W Ma, S Liu, Q Huang - Ecology and Evolution, 2021 - Wiley Online Library
Background Some ferns have medicinal properties and are used in therapeutic
interventions. However, the classification and phylogenetic relationships of ferns remain …

Exploring the phylogeny of the marattialean ferns

S Lehtonen, P Poczai, G Sablok, J Hyvönen… - …, 2020 - Wiley Online Library
The eusporangiate marattialean ferns represent an ancient radiation with a rich fossil record
but limited modern diversity in the tropics. The long evolutionary history without close extant …

Comparative genomic analysis of Polypodiaceae chloroplasts reveals fine structural features and dynamic insertion sequences

S Liu, Z Wang, Y Su, T Wang - BMC Plant Biology, 2021 - Springer
Background Comparative chloroplast genomics could shed light on the major evolutionary
events that established plastomic diversity among closely related species. The …

Mobile elements shape plastome evolution in ferns

TA Robison, AL Grusz, PG Wolf… - Genome Biology and …, 2018 - academic.oup.com
Plastid genomes display remarkable organizational stability over evolutionary time. From
green algae to angiosperms, most plastid genomes are largely collinear, with only a few …

Order‐level fern plastome phylogenomics: new insights from Hymenophyllales

LY Kuo, X Qi, H Ma, FW Li - American Journal of Botany, 2018 - Wiley Online Library
Premise of the Study Filmy ferns (Hymenophyllales) are a highly specialized lineage, having
mesophyll one‐cell layer thick and inhabiting particularly shaded and humid environments …

Patterns and Rates of Plastid rps12 Gene Evolution Inferred in a Phylogenetic Context using Plastomic Data of Ferns

S Liu, Z Wang, H Wang, Y Su, T Wang - Scientific Reports, 2020 - nature.com
The trans-splicing rps 12 gene of fern plastomes (plastid genomes) exhibits a unique
structure owing to its variations in intragenic exon location and intron content, and thus, it …

Plastid Phylogenomic Analyses Reveal the Taxonomic Position of Peucedanum franchetii

B Song, C Liu, D Xie, Y Xiao, R Tian, Z Li, S Zhou, X He - Plants, 2022 - mdpi.com
Peucedanum franchetii is a famous folk medicinal plant in China. However, the taxonomy of
the P. franchetii has not been sufficiently resolved. Due to similar morphological features …

Plastid phylogenomic analysis of tordylieae tribe (Apiaceae, apioideae)

T Samigullin, M Logacheva, E Terentieva… - Plants, 2022 - mdpi.com
Based on the nrDNA ITS sequence data, the Tordylieae tribe is recognized as monophyletic
with three major lineages: the subtribe Tordyliinae, the Cymbocarpum clade, and the …