RNA‐Seq methods for transcriptome analysis

R Hrdlickova, M Toloue, B Tian - Wiley Interdisciplinary …, 2017 - Wiley Online Library
Deep sequencing has been revolutionizing biology and medicine in recent years, providing
single base‐level precision for our understanding of nucleic acid sequences in high …

High‐throughput metagenomics for identification of pathogens in the clinical settings

N Li, Q Cai, Q Miao, Z Song, Y Fang, B Hu - Small methods, 2021 - Wiley Online Library
The application of sequencing technology is shifting from research to clinical laboratories
owing to rapid technological developments and substantially reduced costs. However …

Discovering and understanding oncogenic gene fusions through data intensive computational approaches

NS Latysheva, MM Babu - Nucleic acids research, 2016 - academic.oup.com
Although gene fusions have been recognized as important drivers of cancer for decades,
our understanding of the prevalence and function of gene fusions has been revolutionized …

Characterization of fusion genes and the significantly expressed fusion isoforms in breast cancer by hybrid sequencing

JL Weirather, PT Afshar, TA Clark, E Tseng… - Nucleic acids …, 2015 - academic.oup.com
We developed an innovative hybrid sequencing approach, IDP-fusion, to detect fusion
genes, determine fusion sites and identify and quantify fusion isoforms. IDP-fusion is the first …

PTESFinder: a computational method to identify post-transcriptional exon shuffling (PTES) events

OG Izuogu, AA Alhasan, HM Alafghani… - BMC …, 2016 - Springer
Background Transcripts, which have been subject to Post-transcriptional exon shuffling
(PTES), have an exon order inconsistent with the underlying genomic sequence. These …

Disclosure of the Molecular Mechanism of Wheat Leaf Spot Disease Caused by Bipolaris sorokiniana through Comparative Transcriptome and Metabolomics …

W Ye, T Liu, W Zhang, S Li, M Zhu, H Li… - International Journal of …, 2019 - mdpi.com
Wheat yield is greatly reduced because of the occurrence of leaf spot diseases. Bipolaris
sorokiniana is the main pathogenic fungus in leaf spot disease. In this study, B. sorokiniana …

Transcriptome Sequencing of Chemically Induced Aquilaria sinensis to Identify Genes Related to Agarwood Formation

W Ye, H Wu, X He, L Wang, W Zhang, H Li, Y Fan… - PLoS …, 2016 - journals.plos.org
Background Agarwood is a traditional Chinese medicine used as a clinical sedative,
carminative, and antiemetic drug. Agarwood is formed in Aquilaria sinensis when A. sinensis …

Advancing evolutionary medicine with complete primate genomes and advanced biotechnologies

K Ma, X Yang, Y Mao - Trends in Genetics, 2024 - cell.com
Evolutionary medicine, which integrates evolutionary biology and medicine, significantly
enhances our understanding of human traits and disease susceptibility. However, previous …

[HTML][HTML] Characterization of fusion genes in common and rare epithelial ovarian cancer histologic subtypes

MA Earp, R Raghavan, Q Li, J Dai, SJ Winham… - Oncotarget, 2017 - ncbi.nlm.nih.gov
Gene fusions play a critical role in some cancers and can serve as important clinical targets.
In epithelial ovarian cancer (EOC), the contribution of fusions, especially by histological type …

[HTML][HTML] FusionScan: accurate prediction of fusion genes from RNA-Seq data

P Kim, YE Jang, S Lee - Genomics & informatics, 2019 - ncbi.nlm.nih.gov
Identification of fusion gene is of prominent importance in cancer research field because of
their potential as carcinogenic drivers. RNA sequencing (RNA-Seq) data have been the …