The role of electron transfer dissociation in modern proteomics

NM Riley, JJ Coon - Analytical Chemistry, 2018 - ACS Publications
(MS) and MS-driven proteomics have continued to develop as the premier tools for
characterizing proteome composition, structure, and function. 2 The new era of proteomics …

Ion activation methods for peptides and proteins

LA Macias, IC Santos, JS Brodbelt - Analytical chemistry, 2019 - ACS Publications
Mass spectrometry is well-established as one of the primary methods used to characterize
peptides and proteins. New advances in instrumentation and innovative analytical workflows …

A Broad-Specificity O-Glycoprotease That Enables Improved Analysis of Glycoproteins and Glycopeptides Containing Intact Complex O-Glycans

S Vainauskas, H Guntz, E McLeod, C McClung… - Analytical …, 2021 - ACS Publications
Characterization of mucin-type O-glycans linked to serine/threonine of glycoproteins is
technically challenging, in part, due to a lack of effective enzymatic tools that enable their …

Sample multiplexing strategies in quantitative proteomics

AB Arul, RAS Robinson - Analytical chemistry, 2018 - ACS Publications
Proteomics increasingly contributes to our understanding of the roles that proteins play in
biology and a wide range of applications including the microbiome, bioremediation, 1 and …

Options of the main derivatization approaches for analytical ESI and MALDI mass spectrometry

VG Zaikin, RS Borisov - Critical Reviews in Analytical Chemistry, 2022 - Taylor & Francis
The inclusion of preliminary chemical labeling (derivatization) in the analysis process by
such powerful and widespread methods as electrospray ionization (ESI) and matrix-assisted …

Site-specific characterization and quantitation of N-glycopeptides in PKM2 knockout breast cancer cells using DiLeu isobaric tags enabled by electron-transfer/higher …

Z Chen, Q Yu, L Hao, F Liu, J Johnson, Z Tian, WJ Kao… - Analyst, 2018 - pubs.rsc.org
The system-wide site-specific analysis of intact glycopeptides is crucial for understanding
the exact functional relevance of protein glycosylation. A dedicated workflow with the …

Mass spectrometry-based proteomics and glycoproteomics in COVID-19 biomarkers identification: a mini-review

L Zhong, L Zhu, ZW Cai - Journal of Analysis and Testing, 2021 - Springer
The first corona-pandemic, coronavirus disease 2019 (COVID-19) caused a huge health
crisis and incalculable damage worldwide. Knowledge of how to cure the disease is urgently …

Acetyl-CoA flux from the cytosol to the ER regulates engagement and quality of the secretory pathway

IA Dieterich, Y Cui, MM Braun, AJ Lawton… - Scientific Reports, 2021 - nature.com
Nε-lysine acetylation in the ER is an essential component of the quality control machinery.
ER acetylation is ensured by a membrane transporter, AT-1/SLC33A1, which translocates …

Enrichment and fragmentation approaches for enhanced detection and characterization of endogenous glycosylated neuropeptides

A Phetsanthad, C Roycroft, L Li - Proteomics, 2023 - Wiley Online Library
Glycosylated neuropeptides were recently discovered in crustaceans, a model organism
with a well‐characterized neuroendocrine system. Several workflows exist to characterize …

Targeted Mass Spectrometry Approach Enabled Discovery of O-Glycosylated Insulin and Related Signaling Peptides in Mouse and Human Pancreatic Islets

Q Yu, A Canales, MS Glover, R Das, X Shi… - Analytical …, 2017 - ACS Publications
O-Linked glycosylation often involves the covalent attachment of sugar moieties to the
hydroxyl group of serine or threonine on proteins/peptides. Despite growing interest in …