Current advances in comprehensive omics data mining for oncology and cancer research

E Jeong, S Yoon - Biochimica et Biophysica Acta (BBA)-Reviews on …, 2023 - Elsevier
The availability of a large amount of multiomics data enables data-driven discovery studies
on cancers. High-throughput data on mutations, gene/protein expression, immune scores …

Progress in toxicogenomics to protect human health

MJ Meier, J Harrill, K Johnson, RS Thomas… - Nature Reviews …, 2024 - nature.com
Toxicogenomics measures molecular features, such as transcripts, proteins, metabolites and
epigenomic modifications, to understand and predict the toxicological effects of …

Integrated multi-omics analysis of Alzheimer's disease shows molecular signatures associated with disease progression and potential therapeutic targets

P Kodam, R Sai Swaroop, SS Pradhan… - Scientific reports, 2023 - nature.com
Alzheimer's disease (AD) is a progressive neurodegenerative disease characterized by the
formation of amyloid plaques implicated in neuronal death. Genetics, age, and sex are the …

PDPN contributes to constructing immunosuppressive microenvironment in IDH wildtype glioma

X Wang, X Wang, J Li, J Liang, X Ren, D Yun… - Cancer Gene …, 2023 - nature.com
The tumor immunosuppressive microenvironment (IME) significantly affects tumor
occurrence, progression, and prognosis, but the underlying molecular mechanisms remain …

Deep generative modeling of sample-level heterogeneity in single-cell genomics

P Boyeau, J Hong, A Gayoso, M Kim… - BioRxiv, 2022 - biorxiv.org
The field of single-cell genomics is now observing a marked increase in the prevalence of
cohort-level studies that include hundreds of samples and feature complex designs. These …

Identification of drug candidates targeting monocyte reprogramming in people living with HIV

R Knoll, L Bonaguro, JC Dos Santos… - Frontiers in …, 2023 - frontiersin.org
Introduction People living with HIV (PLHIV) are characterized by functional reprogramming
of innate immune cells even after long-term antiretroviral therapy (ART). In order to assess …

ViCEKb: Vitiligo-linked Chemical Exposome Knowledgebase

N Chivukula, K Ramesh, A Subbaroyan… - Science of The Total …, 2024 - Elsevier
Vitiligo is a complex disease wherein the environmental factors, in conjunction with the
underlying genetic predispositions, trigger the autoimmune destruction of melanocytes …

Central insulin dysregulation in antipsychotic-naïve first-episode psychosis: In silico exploration of gene expression signatures

J Lee, X Xue, E Au, WB McIntyre, R Asgariroozbehani… - Psychiatry …, 2024 - Elsevier
Antipsychotic drug (AP)-naïve first-episode psychosis (FEP) patients display premorbid
cognitive dysfunctions and dysglycemia. Brain insulin resistance may link metabolic and …

Orthogonal proteogenomic analysis identifies the druggable PA2G4-MYC axis in 3q26 AML

M Marchesini, A Gherli, E Simoncini, LMD Tor… - Nature …, 2024 - nature.com
The overexpression of the ecotropic viral integration site-1 gene (EVI1/MECOM) marks the
most lethal acute myeloid leukemia (AML) subgroup carrying chromosome 3q26 …

RNA Sequencing in Disease Diagnosis

C Smail, SB Montgomery - Annual Review of Genomics and …, 2024 - annualreviews.org
RNA sequencing (RNA-seq) enables the accurate measurement of multiple transcriptomic
phenotypes for modeling the impacts of disease variants. Advances in technologies …