Moving beyond DNA sequence to improve plant stress responses

F Saeed, UK Chaudhry, A Bakhsh, A Raza… - Frontiers in …, 2022 - frontiersin.org
Plants offer a habitat for a range of interactions to occur among different stress factors.
Epigenetics has become the most promising functional genomics tool, with huge potential …

Analyzing modern biomolecules: the revolution of nucleic-acid sequencing–Review

G Dorado, S Gálvez, TE Rosales, VF Vásquez… - Biomolecules, 2021 - mdpi.com
Recent developments have revolutionized the study of biomolecules. Among them are
molecular markers, amplification and sequencing of nucleic acids. The latter is classified into …

Bacterial N4-methylcytosine as an epigenetic mark in eukaryotic DNA

F Rodriguez, IA Yushenova, D DiCorpo… - Nature …, 2022 - nature.com
DNA modifications are used to regulate gene expression and defend against invading
genetic elements. In eukaryotes, modifications predominantly involve C5-methylcytosine …

Moderate Salinity Stress Affects Expression of Main Sugar Metabolism and Transport Genes and Soluble Carbohydrate Content in Ripe Fig Fruits (Ficus carica L. cv …

A Mascellani, L Natali, A Cavallini, F Mascagni… - Plants, 2021 - mdpi.com
Fig trees (Ficus carica L.) are commonly grown in the Mediterranean area, where salinity is
an increasing problem in coastal areas. Young, fruiting plants of cv. Dottato were subjected …

Shaping eukaryotic epigenetic systems by horizontal gene transfer

IR Arkhipova, IA Yushenova, F Rodriguez - BioEssays, 2023 - Wiley Online Library
DNA methylation constitutes one of the pillars of epigenetics, relying on covalent bonds for
addition and/or removal of chemically distinct marks within the major groove of the double …

Epigenetic modification for horticultural plant improvement comes of age

S Chachar, M Chachar, A Riaz, AA Shaikh, X Li, X Li… - Scientia …, 2022 - Elsevier
Our era has witnessed tremendous technique advances and mechanically epigenetic
improvement in plant epigenetics, mainly including histone post-translational modifications …

DNA N6-methyladenine modification in eukaryotic genome

H Li, N Zhang, Y Wang, S Xia, Y Zhu, C Xing… - Frontiers in …, 2022 - frontiersin.org
DNA methylation is treated as an important epigenetic mark in various biological activities. In
the past, a large number of articles focused on 5 mC while lacking attention to N6 …

Biochemical and structural characterization of the first-discovered metazoan DNA cytosine-N4 methyltransferase from the bdelloid rotifer Adineta vaga

J Zhou, JR Horton, G Kaur, Q Chen, X Li… - Journal of Biological …, 2023 - ASBMB
Much is known about the generation, removal, and roles of 5-methylcytosine (5mC) in
eukaryote DNA, and there is a growing body of evidence regarding N6-methyladenine, but …

Harnessing current knowledge of DNA N6-methyladenosine from model plants for non-model crops

S Chachar, J Liu, P Zhang, A Riaz, C Guan… - Frontiers in genetics, 2021 - frontiersin.org
Epigenetic modifications alter the gene activity and function by causing change in the
chromosomal architecture through DNA methylation/demethylation, or histone modifications …

Same modification, different location: the mythical role of N6-adenine methylation in plant genomes

IA Jiménez-Ramírez, G Pijeira-Fernández… - Planta, 2022 - Springer
Main conclusion The present review summarizes recent advances in the understanding of
6mA in DNA as an emergent epigenetic mark with distinctive characteristics, discusses its …