Pentatricopeptide repeat proteins in plants

A Barkan, I Small - Annual review of plant biology, 2014 - annualreviews.org
Pentatricopeptide repeat (PPR) proteins constitute one of the largest protein families in land
plants, with more than 400 members in most species. Over the past decade, much has been …

RNA editing in plants and its evolution

M Takenaka, A Zehrmann, D Verbitskiy… - Annual review of …, 2013 - annualreviews.org
RNA editing alters the identity of nucleotides in RNA molecules such that the information for
a protein in the mRNA differs from the prediction of the genomic DNA. In chloroplasts and …

Redefining the structural motifs that determine RNA binding and RNA editing by pentatricopeptide repeat proteins in land plants

S Cheng, B Gutmann, X Zhong, Y Ye… - The Plant …, 2016 - Wiley Online Library
The pentatricopeptide repeat (PPR) proteins form one of the largest protein families in land
plants. They are characterised by tandem 30–40 amino acid motifs that form an extended …

Delineation of pentatricopeptide repeat codes for target RNA prediction

J Yan, Y Yao, S Hong, Y Yang, C Shen… - Nucleic acids …, 2019 - academic.oup.com
Members of the pentatricopeptide repeat (PPR) protein family are sequence-specific RNA-
binding proteins that play crucial roles in organelle RNA metabolism. Each PPR protein …

H2O2 negatively regulates aluminum resistance via oxidation and degradation of the transcription factor STOP1

X Wei, Y Zhu, W Xie, W Ren, Y Zhang, H Zhang… - The Plant …, 2024 - academic.oup.com
Aluminum (Al) stress triggers the accumulation of hydrogen peroxide (H2O2) in roots.
However, whether H2O2 plays a regulatory role in aluminum resistance remains unclear. In …

Expansion and function of repeat domain proteins during stress and development in plants

M Sharma, GK Pandey - Frontiers in plant science, 2016 - frontiersin.org
The recurrent repeats having conserved stretches of amino acids exists across all domains
of life. Subsequent repetition of single sequence motif and the number and length of the …

RNA metabolism in plant mitochondria

K Hammani, P Giegé - Trends in plant science, 2014 - cell.com
Mitochondria are essential for the eukaryotic cell and are derived from the endosymbiosis of
an α-proteobacterial ancestor. Compared to other eukaryotes, RNA metabolism in plant …

Improved computational target site prediction for pentatricopeptide repeat RNA editing factors

M Takenaka, A Zehrmann, A Brennicke, K Graichen - PloS one, 2013 - journals.plos.org
Pentatricopeptide repeat (PPR) proteins with an E domain have been identified as specific
factors for C to U RNA editing in plant organelles. These PPR proteins bind to a unique …

Transcriptomic analyses of rice (Oryza sativa) genes and non-coding RNAs under nitrogen starvation using multiple omics technologies

SY Shin, JS Jeong, JY Lim, T Kim, JH Park, JK Kim… - BMC genomics, 2018 - Springer
Background Nitrogen (N) is a key macronutrient essential for plant growth, and its availability
has a strong influence on crop development. The application of synthetic N fertilizers on …

The Putative Peptide Gene FEP1 Regulates Iron Deficiency Response in Arabidopsis

T Hirayama, GJ Lei, N Yamaji… - Plant and Cell …, 2018 - academic.oup.com
Iron is an essential element for all organisms, and plants have developed sophisticated
systems to acquire iron and maintain iron homeostasis. We found that an Arabidopsis …