Genomic innovation for crop improvement

MW Bevan, C Uauy, BBH Wulff, J Zhou, K Krasileva… - Nature, 2017 - nature.com
Crop production needs to increase to secure future food supplies, while reducing its impact
on ecosystems. Detailed characterization of plant genomes and genetic diversity is crucial …

[HTML][HTML] Advances in optical mapping for genomic research

Y Yuan, CYL Chung, TF Chan - Computational and Structural …, 2020 - Elsevier
Recent advances in optical mapping have allowed the construction of improved genome
assemblies with greater contiguity. Optical mapping also enables genome comparison and …

Shifting the limits in wheat research and breeding using a fully annotated reference genome

International Wheat Genome Sequencing Consortium … - Science, 2018 - science.org
INTRODUCTION Wheat (Triticum aestivum L.) is the most widely cultivated crop on Earth,
contributing about a fifth of the total calories consumed by humans. Consequently, wheat …

Two gap-free reference genomes and a global view of the centromere architecture in rice

JM Song, WZ Xie, S Wang, YX Guo, DH Koo, D Kudrna… - Molecular plant, 2021 - cell.com
Rice (Oryza sativa), a major staple throughout the world and a model system for plant
genomics and breeding, was the first crop genome sequenced almost two decades ago …

A reference genome for pea provides insight into legume genome evolution

J Kreplak, MA Madoui, P Cápal, P Novák, K Labadie… - Nature …, 2019 - nature.com
We report the first annotated chromosome-level reference genome assembly for pea, Gregor
Mendel's original genetic model. Phylogenetics and paleogenomics show genomic …

A chromosome conformation capture ordered sequence of the barley genome

M Mascher, H Gundlach, A Himmelbach, S Beier… - Nature, 2017 - nature.com
Cereal grasses of the Triticeae tribe have been the major food source in temperate regions
since the dawn of agriculture. Their large genomes are characterized by a high content of …

GenBank

DA Benson, M Cavanaugh, K Clark… - Nucleic acids …, 2016 - pmc.ncbi.nlm.nih.gov
GenBank®(www. ncbi. nlm. nih. gov/genbank/) is a comprehensive database that contains
publicly available nucleotide sequences for 370 000 formally described species. These …

Hybrid assembly of the large and highly repetitive genome of Aegilops tauschii, a progenitor of bread wheat, with the MaSuRCA mega-reads algorithm

AV Zimin, D Puiu, MC Luo, T Zhu, S Koren… - Genome …, 2017 - genome.cshlp.org
Long sequencing reads generated by single-molecule sequencing technology offer the
possibility of dramatically improving the contiguity of genome assemblies. The biggest …

[HTML][HTML] Advances in genomics for adapting crops to climate change

A Scheben, Y Yuan, D Edwards - Current Plant Biology, 2016 - Elsevier
Climate change is a major threat to food security in a world of rising crop demand. Although
increases in crop production have previously been achieved through the use of fertilisers …

Multiple hybrid de novo genome assembly of finger millet, an orphan allotetraploid crop

M Hatakeyama, S Aluri, MT Balachadran… - DNA …, 2018 - academic.oup.com
Finger millet (Eleusine coracana (L.) Gaertn) is an important crop for food security because
of its tolerance to drought, which is expected to be exacerbated by global climate changes …