Advances in CLIP technologies for studies of protein-RNA interactions

FCY Lee, J Ule - Molecular cell, 2018 - cell.com
RNA binding proteins (RBPs) regulate all aspects in the life cycle of RNA molecules. To
elucidate the elements that guide RNA specificity, regulatory mechanisms, and functions of …

Mechanisms of alternative splicing regulation: insights from molecular and genomics approaches

M Chen, JL Manley - Nature reviews Molecular cell biology, 2009 - nature.com
Alternative splicing of mRNA precursors provides an important means of genetic control and
is a crucial step in the expression of most genes. Alternative splicing markedly affects human …

FTO-dependent demethylation of N6-methyladenosine regulates mRNA splicing and is required for adipogenesis

X Zhao, Y Yang, BF Sun, Y Shi, X Yang, W Xiao… - Cell research, 2014 - nature.com
Abstract The role of Fat Mass and Obesity-associated protein (FTO) and its substrate N6-
methyladenosine (m 6 A) in mRNA processing and adipogenesis remains largely unknown …

SRSF1-regulated alternative splicing in breast cancer

O Anczuków, M Akerman, A Cléry, J Wu, C Shen… - Molecular cell, 2015 - cell.com
Splicing factor SRSF1 is upregulated in human breast tumors, and its overexpression
promotes transformation of mammary cells. Using RNA-seq, we identified SRSF1-regulated …

[HTML][HTML] SR proteins: binders, regulators, and connectors of RNA

S Jeong - Molecules and cells, 2017 - Elsevier
Serine and arginine-rich (SR) proteins are RNA-binding proteins (RBPs) known as
constitutive and alternative splicing regulators. As splicing is linked to transcriptional and …

SR proteins are NXF1 adaptors that link alternative RNA processing to mRNA export

M Müller-McNicoll, V Botti… - Genes & …, 2016 - genesdev.cshlp.org
Nuclear export factor 1 (NXF1) exports mRNA to the cytoplasm after recruitment to mRNA by
specific adaptor proteins. How and why cells use numerous different export adaptors is …

The SR protein family of splicing factors: master regulators of gene expression

JC Long, JF Caceres - Biochemical Journal, 2009 - portlandpress.com
The SR protein family comprises a number of phylogenetically conserved and structurally
related proteins with a characteristic domain rich in arginine and serine residues, known as …

Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins

D Ray, H Kazan, ET Chan, LP Castillo… - Nature …, 2009 - nature.com
Metazoan genomes encode hundreds of RNA-binding proteins (RBPs) but RNA-binding
preferences for relatively few RBPs have been well defined. Current techniques for …

[HTML][HTML] Genome-wide analysis reveals SR protein cooperation and competition in regulated splicing

S Pandit, Y Zhou, L Shiue, G Coutinho-Mansfield, H Li… - Molecular cell, 2013 - cell.com
SR proteins are well-characterized RNA binding proteins that promote exon inclusion by
binding to exonic splicing enhancers (ESEs). However, it has been unclear whether …

HITS‐CLIP: panoramic views of protein–RNA regulation in living cells

RB Darnell - Wiley Interdisciplinary Reviews: RNA, 2010 - Wiley Online Library
The study of gene regulation in cells has recently begun to shift from a period dominated by
the study of transcription factor‐DNA interactions to a new focus on RNA regulation. This …