Regulation of chromatin and gene expression by metabolic enzymes and metabolites

X Li, G Egervari, Y Wang, SL Berger, Z Lu - Nature reviews Molecular …, 2018 - nature.com
Metabolism and gene expression, which are two fundamental biological processes that are
essential to all living organisms, reciprocally regulate each other to maintain homeostasis …

Comprehensive catalog of currently documented histone modifications

Y Zhao, BA Garcia - Cold Spring Harbor perspectives in …, 2015 - cshperspectives.cshlp.org
Modern techniques in molecular biology, genomics, and mass spectrometry–based
proteomics have identified a large number of novel histone posttranslational modifications …

Genome-wide CRISPR screens reveal host factors critical for SARS-CoV-2 infection

J Wei, MM Alfajaro, PC DeWeirdt, RE Hanna… - Cell, 2021 - cell.com
Identification of host genes essential for severe acute respiratory syndrome coronavirus 2
(SARS-CoV-2) infection may reveal novel therapeutic targets and inform our understanding …

Arginine demethylation is catalysed by a subset of JmjC histone lysine demethylases

LJ Walport, RJ Hopkinson, R Chowdhury… - Nature …, 2016 - nature.com
While the oxygen-dependent reversal of lysine N ɛ-methylation is well established, the
existence of bona fide N ω-methylarginine demethylases (RDMs) is controversial. Lysine …

JMJD family proteins in cancer and inflammation

W Manni, X Jianxin, H Weiqi, C Siyuan… - Signal transduction and …, 2022 - nature.com
The occurrence of cancer entails a series of genetic mutations that favor uncontrollable
tumor growth. It is believed that various factors collectively contribute to cancer, and there is …

The expanding constellation of histone post-translational modifications in the epigenetic landscape

V Cavalieri - Genes, 2021 - mdpi.com
The emergence of a nucleosome-based chromatin structure accompanied the evolutionary
transition from prokaryotes to eukaryotes. In this scenario, histones became the heart of the …

The role of phosphatidylserine recognition receptors in multiple biological functions

MB Naeini, V Bianconi, M Pirro, A Sahebkar - Cellular & molecular biology …, 2020 - Springer
Apoptotic cells are rapidly engulfed and degraded by phagocytes through efferocytosis.
Efferocytosis is a highly regulated process. It is triggered upon the activation of caspase …

Recent progress in histone demethylase inhibitors

TE McAllister, KS England, RJ Hopkinson… - Journal of medicinal …, 2016 - ACS Publications
There is increasing interest in targeting histone N-methyl-lysine demethylases (KDMs) with
small molecules both for the generation of probes for target exploration and for therapeutic …

A global view of the human post-translational modification landscape

N Kitamura, JJ Galligan - Biochemical Journal, 2023 - portlandpress.com
Post-translational modifications (PTMs) provide a rapid response to stimuli, finely tuning
metabolism and gene expression and maintain homeostasis. Advances in mass …

Protein hydroxylation catalyzed by 2-oxoglutarate-dependent oxygenases

S Markolovic, SE Wilkins, CJ Schofield - Journal of Biological Chemistry, 2015 - ASBMB
The post-translational hydroxylation of prolyl and lysyl residues, as catalyzed by 2-
oxoglutarate (2OG)-dependent oxygenases, was first identified in collagen biosynthesis …