The genome sequence archive family: toward explosive data growth and diverse data types

T Chen, X Chen, S Zhang, J Zhu, B Tang… - Genomics …, 2021 - academic.oup.com
Abstract The Genome Sequence Archive (GSA) is a data repository for archiving raw
sequence data, which provides data storage and sharing services for worldwide scientific …

Database resources of the national genomics data center, China national center for bioinformation in 2022

Nucleic Acids Research, 2022 - academic.oup.com
Abstract The National Genomics Data Center (NGDC), part of the China National Center for
Bioinformation (CNCB), provides a family of database resources to support global research …

KaKs_Calculator 3.0: calculating selective pressure on coding and non-coding sequences

Z Zhang - Genomics, Proteomics and Bioinformatics, 2022 - academic.oup.com
Abstract KaKs_Calculator 3.0 is an updated toolkit that is capable of calculating selective
pressure on both coding and non-coding sequences. Similar to the nonsynonymous …

Database resources of the national genomics data center, China national center for bioinformation in 2023

Nucleic acids research, 2023 - academic.oup.com
Abstract The National Genomics Data Center (NGDC), part of the China National Center for
Bioinformation (CNCB), provides a family of database resources to support global academic …

[HTML][HTML] Gut microbiota alters host bile acid metabolism to contribute to intrahepatic cholestasis of pregnancy

B Tang, L Tang, S Li, S Liu, J He, P Li, S Wang… - Nature …, 2023 - nature.com
Intrahepatic cholestasis of pregnancy (ICP) is a female pregnancy-specific disorder that is
characterized by increased serum bile acid and adverse fetal outcomes. The aetiology and …

[HTML][HTML] Integrating omics databases for enhanced crop breeding

H Chao, S Zhang, Y Hu, Q Ni, S Xin, L Zhao… - Journal of Integrative …, 2024 - degruyter.com
Crop plant breeding involves selecting and developing new plant varieties with desirable
traits such as increased yield, improved disease resistance, and enhanced nutritional value …

High-Quality Arabidopsis Thaliana Genome Assembly with Nanopore and HiFi Long Reads

B Wang, X Yang, Y Jia, Y Xu, P Jia… - Genomics …, 2022 - academic.oup.com
Arabidopsis thaliana is an important and long-established model species for plant molecular
biology, genetics, epigenetics, and genomics. However, the latest version of reference …

Genome Warehouse: a public repository housing genome-scale data

M Chen, Y Ma, S Wu, X Zheng, H Kang… - Genomics …, 2021 - academic.oup.com
Abstract The Genome Warehouse (GWH) is a public repository housing genome assembly
data for a wide range of species and delivering a series of web services for genome data …

LncBook 2.0: integrating human long non-coding RNAs with multi-omics annotations

Z Li, L Liu, C Feng, Y Qin, J Xiao… - Nucleic Acids …, 2023 - academic.oup.com
LncBook, a comprehensive resource of human long non-coding RNAs (lncRNAs), has been
used in a wide range of lncRNA studies across various biological contexts. Here, we present …

The 2022 Nucleic Acids Research database issue and the online molecular biology database collection

DJ Rigden, XM Fernández - Nucleic acids research, 2022 - academic.oup.com
Abstract The 2022 Nucleic Acids Research Database Issue contains 185 papers, including
87 papers reporting on new databases and 85 updates from resources previously published …