High nrDNA ITS polymorphism in the ancient extant seed plant Cycas: incomplete concerted evolution and the origin of pseudogenes

LQ Xiao, M Möller, H Zhu - Molecular Phylogenetics and Evolution, 2010 - Elsevier
Molecular studies of six species from the ancient extant seed plant Cycas, covering a wide
range of its morphological diversity and all major areas of distribution, revealed a high level …

RECOMBFLOW: a scientific workflow environment for Intragenomic Gene Conversion analysis in bacterial genomes, including the pathogen Streptococcus pyogenes

J Alhiyafi, C Sabesan, S Lu… - International journal of …, 2009 - inderscienceonline.com
Intragenomic Gene Conversion (IGC) is important in the evolution of bacteria but has only
been analysed computationally in a few strains of Escherichia coli. This paper describes a …

A scientific workflow system for genomic data analysis

JAM Alhiyafi - 2010 - digitalcommons.wayne.edu
Scientific workflows have become increasingly popular as a new computing paradigm for
scientists to design and execute complex and distributed scientific processes to enable and …

Simulation of genomic recombination and the influence of DNA sequence diversity on cluster formation and detectability of recombination: a scientific workflow method

J Alhiyafi, S Lu, JL Ram - International Journal of …, 2009 - inderscienceonline.com
The detection of recombination from DNA sequences is relevant to the understanding of
evolutionary and molecular genetics. We developed a Recombination Simulation Scientific …

Association analysis between Intragenomic Gene Conversions and pathogenicity in genomes of Escherichia coli and Shigella spp.: a scientific workflow approach

J Alhiyafi, C Sabesan, S Lu… - International Journal of …, 2009 - inderscienceonline.com
The RECOMBFLOW scientific workflow system was used to test a previously suggested
hypothesis that pathogenic Escherichia coli have more Intragenomic Gene Conversions …

Recombflow: A scientific workflow environment for intragenomic recombination analysis

C Sabesan - 2007 - search.proquest.com
This thesis describes a scientific workflow environment developed to identify and analyze
multigene families present in a genome and intragenomic recombination events that have …