Microsatellite markers: an overview of the recent progress in plants

RK Kalia, MK Rai, S Kalia, R Singh, AK Dhawan - Euphytica, 2011 - Springer
In recent years, molecular markers have been utilized for a variety of applications including
examination of genetic relationships between individuals, mapping of useful genes …

Genic microsatellite markers in plants: features and applications

RK Varshney, A Graner, ME Sorrells - TRENDS in Biotechnology, 2005 - cell.com
Expressed sequence tag (EST) projects have generated a vast amount of publicly available
sequence data from plant species; these data can be mined for simple sequence repeats …

Genotyping-by-sequencing in plants

S Deschamps, V Llaca, GD May - Biology, 2012 - mdpi.com
The advent of next-generation DNA sequencing (NGS) technologies has led to the
development of rapid genome-wide Single Nucleotide Polymorphism (SNP) detection …

EST-SSRs as a resource for population genetic analyses

JR Ellis, JM Burke - Heredity, 2007 - nature.com
Simple-sequence repeats (SSRs) have increasingly become the marker of choice for
population genetic analyses. Unfortunately, the development of traditional 'anonymous' …

De novo assembly and characterization of root transcriptome using Illumina paired-end sequencing and development of cSSR markers in sweetpotato (Ipomoea …

Z Wang, B Fang, J Chen, X Zhang, Z Luo, L Huang… - BMC genomics, 2010 - Springer
Background The tuberous root of sweetpotato is an important agricultural and biological
organ. There are not sufficient transcriptomic and genomic data in public databases for …

Characterization of the sesame (Sesamum indicum L.) global transcriptome using Illumina paired-end sequencing and development of EST-SSR markers

W Wei, X Qi, L Wang, Y Zhang, W Hua, D Li, H Lv… - BMC genomics, 2011 - Springer
Background Sesame is an important oil crop, but limited transcriptomic and genomic data
are currently available. This information is essential to clarify the fatty acid and lignan …

Genome-Wide Distribution and Organization of Microsatellites in Plants: An Insight into Marker Development in Brachypodium

H Sonah, RK Deshmukh, A Sharma, VP Singh… - Plos one, 2011 - journals.plos.org
Plant genomes are complex and contain large amounts of repetitive DNA including
microsatellites that are distributed across entire genomes. Whole genome sequences of …

Nonrandom distribution and frequencies of genomic and EST-derived microsatellite markers in rice, wheat, and barley

M La Rota, RV Kantety, JK Yu, ME Sorrells - BMC genomics, 2005 - Springer
Background Earlier comparative maps between the genomes of rice (Oryza sativa L.), barley
(Hordeum vulgare L.) and wheat (Triticum aestivum L.) were linkage maps based on cDNA …

Mining and survey of simple sequence repeats in expressed sequence tags of dicotyledonous species

SP Kumpatla, S Mukhopadhyay - Genome, 2005 - cdnsciencepub.com
Simple sequence repeat (SSR) markers are widely used in many plant and animal genomes
due to their abundance, hypervariability, and suitability for high-throughput analysis …

Simple sequence repeat polymorphisms (SSRPs) for evaluation of molecular diversity and germplasm classification of minor crops

YJ Park, JK Lee, NS Kim - Molecules, 2009 - mdpi.com
Evaluation of the genetic diversity among populations is an essential prerequisite for the
preservation of endangered species. Thousands of new accessions are introduced into …