Codon usage bias: causative factors, quantification methods and genome‐wide patterns: with emphasis on insect genomes

SK Behura, DW Severson - Biological Reviews, 2013 - Wiley Online Library
Codon usage bias refers to the phenomenon where specific codons are used more often
than other synonymous codons during translation of genes, the extent of which varies within …

The queuine micronutrient: charting a course from microbe to man

C Fergus, D Barnes, MA Alqasem, VP Kelly - Nutrients, 2015 - mdpi.com
Micronutrients from the diet and gut microbiota are essential to human health and wellbeing.
Arguably, among the most intriguing and enigmatic of these micronutrients is queuine, an …

[HTML][HTML] Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution

JJ Smith, S Kuraku, C Holt, T Sauka-Spengler… - Nature …, 2013 - nature.com
Lampreys are representatives of an ancient vertebrate lineage that diverged from our own∼
500 million years ago. By virtue of this deeply shared ancestry, the sea lamprey (P. marinus) …

Highly evolvable malaria vectors: The genomes of 16 Anopheles mosquitoes

DE Neafsey, RM Waterhouse, MR Abai, SS Aganezov… - Science, 2015 - science.org
INTRODUCTION Control of mosquito vectors has historically proven to be an effective
means of eliminating malaria. Human malaria is transmitted only by mosquitoes in the genus …

[HTML][HTML] Evolution of genes and genomes on the Drosophila phylogeny

AG Clark, MB Eisen, DR Smith, CM Bergman, B Oliver… - Nature, 2007 - hal.science
Comparative analysis of multiple genomes in a phylogenetic framework dramatically
improves the precision and sensitivity of evolutionary inference, producing more robust …

A versatile toolkit for CRISPR-Cas13-based RNA manipulation in Drosophila

N Huynh, N Depner, R Larson, K King-Jones - Genome Biology, 2020 - Springer
Advances in CRISPR technology have immensely improved our ability to manipulate nucleic
acids, and the recent discovery of the RNA-targeting endonuclease Cas13 adds even further …

Genus-wide characterization of bumblebee genomes provides insights into their evolution and variation in ecological and behavioral traits

C Sun, J Huang, Y Wang, X Zhao, L Su… - Molecular biology …, 2021 - academic.oup.com
Bumblebees are a diverse group of globally important pollinators in natural ecosystems and
for agricultural food production. With both eusocial and solitary life-cycle phases, and some …

Analysis of Nipah virus codon usage and adaptation to hosts

R Khandia, S Singhal, U Kumar, A Ansari… - Frontiers in …, 2019 - frontiersin.org
A recent outbreak of Nipah virus (NiV) in India has caused 17 deaths in people living in
districts of Kerala state. Its zoonotic nature, as well as high rate of human-to-human …

Estimating Divergence Dates and Substitution Rates in the Drosophila Phylogeny

DJ Obbard, J Maclennan, KW Kim… - Molecular biology …, 2012 - academic.oup.com
An absolute timescale for evolution is essential if we are to associate evolutionary
phenomena, such as adaptation or speciation, with potential causes, such as geological …

Genome sequencing reveals complex speciation in the Drosophila simulans clade

D Garrigan, SB Kingan, AJ Geneva… - Genome …, 2012 - genome.cshlp.org
The three species of the Drosophila simulans clade—the cosmopolitan species, D.
simulans, and the two island endemic species, D. mauritiana and D. sechellia—are …