[PDF][PDF] H2o automl: Scalable automatic machine learning

E LeDell, S Poirier - Proceedings of the AutoML Workshop at ICML, 2020 - automl.org
H2O is an open source, distributed machine learning platform designed to scale to very
large datasets, with APIs in R, Python, Java and Scala. We present H2O AutoML, a highly …

Bridging the gap between mechanistic biological models and machine learning surrogates

IM Gherman, ZS Abdallah, W Pang… - PLoS Computational …, 2023 - journals.plos.org
Mechanistic models have been used for centuries to describe complex interconnected
processes, including biological ones. As the scope of these models has widened, so have …

AutoML: A survey of the state-of-the-art

X He, K Zhao, X Chu - Knowledge-based systems, 2021 - Elsevier
Deep learning (DL) techniques have obtained remarkable achievements on various tasks,
such as image recognition, object detection, and language modeling. However, building a …

Multi-Objective Hyperparameter Optimization--An Overview

F Karl, T Pielok, J Moosbauer, F Pfisterer… - arXiv preprint arXiv …, 2022 - arxiv.org
Hyperparameter optimization constitutes a large part of typical modern machine learning
workflows. This arises from the fact that machine learning methods and corresponding …

TPOT: A tree-based pipeline optimization tool for automating machine learning

RS Olson, JH Moore - Workshop on automatic machine …, 2016 - proceedings.mlr.press
As data science becomes more mainstream, there will be an ever-growing demand for data
science tools that are more accessible, flexible, and scalable. In response to this demand …

A comparison of AutoML tools for machine learning, deep learning and XGBoost

L Ferreira, A Pilastri, CM Martins… - … Joint Conference on …, 2021 - ieeexplore.ieee.org
This paper presents a benchmark of supervised Automated Machine Learning (AutoML)
tools. Firstly, we analyze the characteristics of eight recent open-source AutoML tools (Auto …

A machine learning Automated Recommendation Tool for synthetic biology

T Radivojević, Z Costello, K Workman… - Nature …, 2020 - nature.com
Synthetic biology allows us to bioengineer cells to synthesize novel valuable molecules
such as renewable biofuels or anticancer drugs. However, traditional synthetic biology …

[HTML][HTML] Sherpa: Robust hyperparameter optimization for machine learning

L Hertel, J Collado, P Sadowski, J Ott, P Baldi - SoftwareX, 2020 - Elsevier
Sherpa is a hyperparameter optimization library for machine learning models. It is
specifically designed for problems with computationally expensive, iterative function …

[HTML][HTML] A machine learning approach to predict metabolic pathway dynamics from time-series multiomics data

Z Costello, HG Martin - NPJ systems biology and applications, 2018 - nature.com
New synthetic biology capabilities hold the promise of dramatically improving our ability to
engineer biological systems. However, a fundamental hurdle in realizing this potential is our …

Augmenting the size of EEG datasets using generative adversarial networks

SM Abdelfattah, GM Abdelrahman… - 2018 International joint …, 2018 - ieeexplore.ieee.org
Electroencephalography (EEG) is one of the most promising methods in the field of Brain-
Computer Interfaces (BCIs) due to its rich time-domain resolution and the availability of …