Chemical reaction networks and opportunities for machine learning

M Wen, EWC Spotte-Smith, SM Blau… - Nature Computational …, 2023 - nature.com
Chemical reaction networks (CRNs), defined by sets of species and possible reactions
between them, are widely used to interrogate chemical systems. To capture increasingly …

Review of machine learning for hydrodynamics, transport, and reactions in multiphase flows and reactors

LT Zhu, XZ Chen, B Ouyang, WC Yan… - Industrial & …, 2022 - ACS Publications
Artificial intelligence (AI), machine learning (ML), and data science are leading to a
promising transformative paradigm. ML, especially deep learning and physics-informed ML …

[HTML][HTML] A review of automated and data-driven approaches for pathway determination and reaction monitoring in complex chemical systems

A Puliyanda, K Srinivasan, K Sivaramakrishnan… - Digital Chemical …, 2022 - Elsevier
In this work, we review the state of the art on approaches for the determination of reaction
networks and the real-time monitoring of reactions in complex chemical systems consisting …

Physics-informed representation and learning: Control and risk quantification

Z Wang, R Keller, X Deng, K Hoshino… - Proceedings of the …, 2024 - ojs.aaai.org
Optimal and safety-critical control are fundamental problems for stochastic systems, and are
widely considered in real-world scenarios such as robotic manipulation and autonomous …

Information theoretic clustering for coarse-grained modeling of non-equilibrium gas dynamics

C Jacobsen, I Zanardi, S Bhola, K Duraisamy… - Journal of …, 2024 - Elsevier
We present a new framework towards the objective of learning coarse-grained models
based on the maximum entropy principle. We show that existing methods for assigning …

Incorporating physical constraints in a deep probabilistic machine learning framework for coarse-graining dynamical systems

S Kaltenbach, PS Koutsourelakis - Journal of Computational Physics, 2020 - Elsevier
Data-based discovery of effective, coarse-grained (CG) models of high-dimensional
dynamical systems presents a unique challenge in computational physics and particularly in …

Model order reduction of positive real systems based on mixed gramian balanced truncation with error bounds

Z Salehi, P Karimaghaee, MH Khooban - Circuits, Systems, and Signal …, 2021 - Springer
In this paper, we discuss the problem of model order reduction for positive real systems
based on balancing methods. The mixed gramian balanced truncation (MGBT) method …

Multiscale kinetic analysis of proteins

JMJ Swanson - Current opinion in structural biology, 2022 - Elsevier
The stochasticity of molecular motion results in the existence of multiple kinetically relevant
pathways in many biomolecular mechanisms. Because it is highly demanding to …

Mixed positive-bounded balanced truncation

Z Salehi, P Karimaghaee… - IEEE Transactions on …, 2021 - ieeexplore.ieee.org
Reducing the order of positive real and bounded real systems has received great interest
over the years. Several methods have been published regarding these issues which are …

Deterministic and stochastic parameter estimation for polymer reaction kinetics i: theory and simple examples

N Wulkow, R Telgmann… - Macromolecular …, 2021 - Wiley Online Library
Two different approaches to parameter estimation (PE) in the context of polymerization are
introduced, refined, combined, and applied. The first is classical PE where one is interested …