Comparative protein structure modeling of genes and genomes

MA Martí-Renom, AC Stuart, A Fiser… - Annual review of …, 2000 - annualreviews.org
▪ Abstract Comparative modeling predicts the three-dimensional structure of a given protein
sequence (target) based primarily on its alignment to one or more proteins of known …

A brief history of macromolecular crystallography, illustrated by a family tree and its N obel fruits

M Jaskolski, Z Dauter, A Wlodawer - The FEBS journal, 2014 - Wiley Online Library
As a contribution to the celebration of the year 2014, declared by the United Nations to be
'The International Year of Crystallography', the FEBS Journal is dedicating this issue to …

Rapid protein-folding assay using green fluorescent protein

GS Waldo, BM Standish, J Berendzen… - Nature …, 1999 - nature.com
Formation of the chromophore of green fluorescent protein (GFP) depends on the correct
folding of the protein. We constructed a" folding reporter" vector, in which a test protein is …

Automated MAD and MIR structure solution

TC Terwilliger, J Berendzen - Biological Crystallography, 1999 - journals.iucr.org
Obtaining an electron-density map from X-ray diffraction data can be difficult and time-
consuming even after the data have been collected, largely because MIR and MAD structure …

Template‐based modeling and free modeling by I‐TASSER in CASP7

Y Zhang - Proteins: Structure, Function, and Bioinformatics, 2007 - Wiley Online Library
We developed and tested the I‐TASSER protein structure prediction algorithm in the CASP7
experiment, where targets are first threaded through the PDB library and continuous …

Completeness in structural genomics

D Vitkup, E Melamud, J Moult, C Sander - nature structural biology, 2001 - nature.com
Structural genomics has the goal of obtaining useful, three-dimensional models of all
proteins by a combination of experimental structure determination and comparative model …

Characterization of the folding degree of proteins

E Estrada - Bioinformatics, 2002 - academic.oup.com
Motivation: The characterization of the folding degree of chains is central to the elucidation
of structure--function relationships in proteins. Here we present a new index for …

Implication of tubby proteins as transcription factors by structure-based functional analysis

TJ Boggon, WS Shan, S Santagata, SC Myers… - Science, 1999 - science.org
Tubby-like proteins (TULPs) are found in a broad range of multicellular organisms. In
mammals, genetic mutation of tubby or other TULPs can result in one or more of three …

Protein structure modeling for structural genomics

R Sánchez, U Pieper, F Melo, N Eswar… - nature structural …, 2000 - nature.com
The shapes of most protein sequences will be modeled based on their similarity to
experimentally determined protein structures. The current role, limitations, challenges and …

A tour of structural genomics

SE Brenner - Nature Reviews Genetics, 2001 - nature.com
Structural genomics projects aim to provide an experimental or computational three-
dimensional model structure for all of the tractable macromolecules that are encoded by …