Widespread antisense transcription in prokaryotes

J Georg, WR Hess - Microbiology Spectrum, 2018 - Am Soc Microbiol
Although bacterial genomes are usually densely protein-coding, genome-wide mapping
approaches of transcriptional start sites revealed that a significant fraction of the identified …

Pyruvate-responsive genetic circuits for dynamic control of central metabolism

X Xu, X Li, Y Liu, Y Zhu, J Li, G Du, J Chen… - Nature Chemical …, 2020 - nature.com
Dynamic regulation is a promising strategy for fine-tuning metabolic fluxes in microbial cell
factories. However, few of these synthetic regulatory systems have been developed for …

When push comes to shove-RNA polymerase and DNA-bound protein roadblocks

N Hao, AJ Donnelly, IB Dodd, KE Shearwin - Biophysical Reviews, 2023 - Springer
In recent years, transcriptional roadblocking has emerged as a crucial regulatory
mechanism in gene expression, whereby other DNA-bound obstacles can block the …

Programming Escherichia coli to function as a digital display

J Shin, S Zhang, BS Der, AAK Nielsen… - Molecular systems …, 2020 - embopress.org
Synthetic genetic circuits offer the potential to wield computational control over biology, but
their complexity is limited by the accuracy of mathematical models. Here, we present …

Transcription of a 5'extended mRNA isoform directs dynamic chromatin changes and interference of a downstream promoter

M Chia, A Tresenrider, J Chen, G Spedale… - Elife, 2017 - elifesciences.org
Cell differentiation programs require dynamic regulation of gene expression. During meiotic
prophase in Saccharomyces cerevisiae, expression of the kinetochore complex subunit …

Programmable DNA looping using engineered bivalent dCas9 complexes

N Hao, KE Shearwin, IB Dodd - Nature Communications, 2017 - nature.com
DNA looping is a ubiquitous and critical feature of gene regulation. Although DNA looping
can be efficiently detected, tools to readily manipulate DNA looping are limited. Here we …

Multilevel Systematic Optimization To Achieve Efficient Integrated Expression of Escherichia coli

ZK Wang, JS Gong, C Su, H Li, ZM Rao… - ACS Synthetic …, 2024 - ACS Publications
Genomic integration of heterologous genes is the preferred approach in industrial
fermentation-related strains due to the drawbacks associated with plasmid-mediated …

The Eleanor ncRNAs activate the topological domain of the ESR1 locus to balance against apoptosis

MOA Abdalla, T Yamamoto, K Maehara… - Nature …, 2019 - nature.com
MCF7 cells acquire estrogen-independent proliferation after long-term estrogen deprivation
(LTED), which recapitulates endocrine therapy resistance. LTED cells can become primed …

[HTML][HTML] Remodeling isoprene pyrophosphate metabolism for promoting terpenoids bioproduction

X Xu, X Lv, S Cui, Y Liu, H Xia, J Li, G Du, Z Li… - Engineering, 2023 - Elsevier
Terpenoids are the largest family of natural products. They are made from the building block
isoprene pyrophosphate (IPP), and their bioproduction using engineered cell factories has …

MetJ-Based Mutually Interfering SAM-ON/SAM-OFF Biosensors

T Watanabe, Y Kimura, D Umeno - ACS Synthetic Biology, 2024 - ACS Publications
SAM (S-adenosylmethionine) is an important metabolite that operates as a major donor of
methyl groups and is a controller of various physiological processes. Its availability is also …