Bacteriophage genomics

RW Hendrix - Current opinion in microbiology, 2003 - Elsevier
Comparative genomic studies of bacteriophages, especially the tailed phages, together with
environmental studies, give a dramatic new picture of the size, genetic structure and …

Xanthomonas bacteriophages: a review of their biology and biocontrol applications in agriculture

R Nakayinga, A Makumi, V Tumuhaise, W Tinzaara - BMC microbiology, 2021 - Springer
Phytopathogenic bacteria are economically important because they affect crop yields and
threaten the livelihoods of farmers worldwide. The genus Xanthomonas is particularly …

[HTML][HTML] Unifying classical and molecular taxonomic classification: analysis of the Podoviridae using BLASTP-based tools

R Lavigne, D Seto, P Mahadevan… - Research in …, 2008 - Elsevier
We defined phage genera by measuring genome relationships by the numbers of shared
homologous/orthologous proteins. We used BLAST-based tools (CoreExtractor. vbs and …

Reticulate representation of evolutionary and functional relationships between phage genomes

G Lima-Mendez, J Van Helden… - Molecular biology …, 2008 - academic.oup.com
Bacteriophage genomes show pervasive mosaicism, indicating the importance of horizontal
gene exchange in their evolution. Phage genomes represent unique combinations of …

Comparative genomics and evolution of the tailed-bacteriophages

SR Casjens - Current opinion in microbiology, 2005 - Elsevier
The number of completely sequenced tailed-bacteriophage genomes that have been
published increased to more than 125 last year. The comparison of these genomes has …

Peptidoglycan hydrolytic activities associated with bacteriophage virions

M Moak, IJ Molineux - Molecular microbiology, 2004 - Wiley Online Library
Murein hydrolases appear to be widespread in the virions of bacteriophages infecting Gram‐
positive or Gram‐negative bacteria. Muralytic activity has been found in virions of the …

Bacteriophage replication modules

C Weigel, H Seitz - FEMS microbiology reviews, 2006 - academic.oup.com
Bacteriophages (prokaryotic viruses) are favourite model systems to study DNA replication
in prokaryotes, and provide examples for every theoretically possible replication …

Bacteriophage taxonomy: an evolving discipline

I Tolstoy, AM Kropinski, JR Brister - … Therapy: From Lab to Clinical Practice, 2018 - Springer
While taxonomy is an often-unappreciated branch of science it serves very important roles.
Bacteriophage taxonomy has evolved from a mainly morphology-based discipline …

Genomic Analysis of Pseudomonas aeruginosa Phages LKD16 and LKA1: Establishment of the φKMV Subgroup within the T7 Supergroup

PJ Ceyssens, R Lavigne, W Mattheus… - Journal of …, 2006 - Am Soc Microbiol
Lytic Pseudomonas aeruginosa phages LKD16 and LKA1 were locally isolated and
morphologically classified as Podoviridae. While LKD16 adsorbs weakly to its host, LKA1 …

The Susceptibility of Pseudomonas aeruginosa Strains from Cystic Fibrosis Patients to Bacteriophages

C Essoh, Y Blouin, G Loukou, A Cablanmian… - PLoS …, 2013 - journals.plos.org
Phage therapy may become a complement to antibiotics in the treatment of chronic
Pseudomonas aeruginosa infection. To design efficient therapeutic cocktails, the genetic …