Ca2+/Calmodulin Complex Triggers CAMTA Transcriptional Machinery Under Stress in Plants: Signaling Cascade and Molecular Regulation

Z Iqbal, M Shariq Iqbal, SP Singh… - Frontiers in Plant …, 2020 - frontiersin.org
Calcium (Ca2+) ion is a critical ubiquitous intracellular second messenger, acting as a lead
currency for several distinct signal transduction pathways. Transient perturbations in free …

Quantifying the underlying landscape, entropy production and biological path of the cell fate decision between apoptosis and pyroptosis

J Jin, F Xu, Z Liu, J Shuai, X Li - Chaos, Solitons & Fractals, 2024 - Elsevier
Pyroptosis, a recently identified type of cell death, and apoptosis are fundamental and
complex biological processes that underlie a multitude of diseases. However, the crosstalk …

Myofilament-associated proteins with intrinsic disorder (MAPIDs) and their resolution by computational modeling

B Sun, PM Kekenes-Huskey - Quarterly reviews of biophysics, 2023 - cambridge.org
The cardiac sarcomere is a cellular structure in the heart that enables muscle cells to
contract. Dozens of proteins belong to the cardiac sarcomere, which work in tandem to …

Pre‐and post‐docking sampling of conformational changes using ClustENM and HADDOCK for protein‐protein and protein‐DNA systems

Z Kurkcuoglu, AMJJ Bonvin - Proteins: Structure, Function, and …, 2020 - Wiley Online Library
Incorporating the dynamic nature of biomolecules in the modeling of their complexes is a
challenge, especially when the extent and direction of the conformational changes taking …

A High‐Affinity Calmodulin‐Binding Site in the CyaA Toxin Translocation Domain is Essential for Invasion of Eukaryotic Cells

A Voegele, M Sadi, DP O'Brien, P Gehan… - Advanced …, 2021 - Wiley Online Library
The molecular mechanisms and forces involved in the translocation of bacterial toxins into
host cells are still a matter of intense research. The adenylate cyclase (CyaA) toxin from …

Bayesian inference of protein conformational ensembles from limited structural data

W Potrzebowski, J Trewhella… - PLoS computational …, 2018 - journals.plos.org
Many proteins consist of folded domains connected by regions with higher flexibility. The
details of the resulting conformational ensemble play a central role in controlling interactions …

Calmodulin fishing with a structurally disordered bait triggers CyaA catalysis

DP O'Brien, D Durand, A Voegele, V Hourdel… - PLoS …, 2017 - journals.plos.org
Once translocated into the cytosol of target cells, the catalytic domain (AC) of the adenylate
cyclase toxin (CyaA), a major virulence factor of Bordetella pertussis, is potently activated by …

In silico elucidation of molecular picture of water–choline chloride mixture

S Sarkar, A Maity, R Chakrabarti - The Journal of Physical …, 2021 - ACS Publications
Choline chloride (ChCl) is a component of several deep eutectic solvents (DESs) having
numerous applications. Recent studies have reported manifold promising use of aqueous …

Electrostatic interactions in molecular recognition of intrinsically disordered proteins

J Yang, Y Zeng, Y Liu, M Gao, S Liu, Z Su… - Journal of …, 2020 - Taylor & Francis
Intrinsically disordered proteins (IDPs) and intrinsically disordered regions (IDRs) are
abundant in all species. They play critical roles in many cellular processes, including …

Perturb–Scan–Pull: A Novel Method Facilitating Conformational Transitions in Proteins

F Jalalypour, O Sensoy, C Atilgan - Journal of Chemical Theory …, 2020 - ACS Publications
Conformational transitions in proteins facilitate precise physiological functions. Therefore, it
is crucial to understand the mechanisms underlying these processes to modulate protein …