A biologist's guide to Bayesian phylogenetic analysis
Bayesian methods have become very popular in molecular phylogenetics due to the
availability of user-friendly software for running sophisticated models of evolution. However …
availability of user-friendly software for running sophisticated models of evolution. However …
Phylogenetic systematics of the genus Echinococcus (Cestoda: Taeniidae)
M Nakao, A Lavikainen, T Yanagida, A Ito - International journal for …, 2013 - Elsevier
Echinococcosis is a serious helminthic zoonosis in humans, livestock and wildlife. The
pathogenic organisms are members of the genus Echinococcus (Cestoda: Taeniidae). Life …
pathogenic organisms are members of the genus Echinococcus (Cestoda: Taeniidae). Life …
IQ-TREE 2: new models and efficient methods for phylogenetic inference in the genomic era
Abstract IQ-TREE (http://www. iqtree. org, last accessed February 6, 2020) is a user-friendly
and widely used software package for phylogenetic inference using maximum likelihood …
and widely used software package for phylogenetic inference using maximum likelihood …
[HTML][HTML] Inferring the mammal tree: species-level sets of phylogenies for questions in ecology, evolution, and conservation
Big, time-scaled phylogenies are fundamental to connecting evolutionary processes to
modern biodiversity patterns. Yet inferring reliable phylogenetic trees for thousands of …
modern biodiversity patterns. Yet inferring reliable phylogenetic trees for thousands of …
[HTML][HTML] SDT: a virus classification tool based on pairwise sequence alignment and identity calculation
The perpetually increasing rate at which viral full-genome sequences are being determined
is creating a pressing demand for computational tools that will aid the objective classification …
is creating a pressing demand for computational tools that will aid the objective classification …
DAMBE6: new tools for microbial genomics, phylogenetics, and molecular evolution
X Xia - Journal of Heredity, 2017 - academic.oup.com
DAMBE is a comprehensive software workbench for data analysis in molecular biology,
phylogenetics, and evolution. Several important new functions have been added since …
phylogenetics, and evolution. Several important new functions have been added since …
The Papillomavirus Episteme: a major update to the papillomavirus sequence database
Abstract The Papillomavirus Episteme (PaVE) is a database of curated papillomavirus
genomic sequences, accompanied by web-based sequence analysis tools. This update …
genomic sequences, accompanied by web-based sequence analysis tools. This update …
DAMBE5: a comprehensive software package for data analysis in molecular biology and evolution
X Xia - Molecular biology and evolution, 2013 - academic.oup.com
Since its first release in 2001 as mainly a software package for phylogenetic analysis, data
analysis for molecular biology and evolution (DAMBE) has gained many new functions that …
analysis for molecular biology and evolution (DAMBE) has gained many new functions that …
[图书][B] Modern phylogenetic comparative methods and their application in evolutionary biology: concepts and practice
LZ Garamszegi - 2014 - Springer
Many evolutionary biologists are concerned with the tremendous amount of diversity of
species, and their phenotypes, that we can currently observe in nature, and one of the most …
species, and their phenotypes, that we can currently observe in nature, and one of the most …
[图书][B] Phylogenetic networks: concepts, algorithms and applications
DH Huson, R Rupp, C Scornavacca - 2010 - books.google.com
The evolutionary history of species is traditionally represented using a rooted phylogenetic
tree. However, when reticulate events such as hybridization, horizontal gene transfer or …
tree. However, when reticulate events such as hybridization, horizontal gene transfer or …