Expasy, the Swiss Bioinformatics Resource Portal, as designed by its users

S Duvaud, C Gabella, F Lisacek… - Nucleic acids …, 2021 - academic.oup.com
Abstract The SIB Swiss Institute of Bioinformatics (https://www. sib. swiss) creates, maintains
and disseminates a portfolio of reliable and state-of-the-art bioinformatics services and …

Protein sequence analysis using the MPI bioinformatics toolkit

F Gabler, SZ Nam, S Till, M Mirdita… - Current Protocols in …, 2020 - Wiley Online Library
Abstract The MPI Bioinformatics Toolkit (https://toolkit. tuebingen. mpg. de) provides
interactive access to a wide range of the best‐performing bioinformatics tools and …

The Bgee suite: integrated curated expression atlas and comparative transcriptomics in animals

FB Bastian, J Roux, A Niknejad, A Comte… - Nucleic acids …, 2021 - academic.oup.com
Bgee is a database to retrieve and compare gene expression patterns in multiple animal
species, produced by integrating multiple data types (RNA-Seq, Affymetrix, in situ …

TISSUES 2.0: an integrative web resource on mammalian tissue expression

O Palasca, A Santos, C Stolte, J Gorodkin… - Database, 2018 - academic.oup.com
Physiological and molecular similarities between organisms make it possible to translate
findings from simpler experimental systems—model organisms—into more complex ones …

Systemic lectin-glycan interaction of pathogenic enteric bacteria in the gastrointestinal tract

SH Cho, J Park, CH Kim - International Journal of Molecular Sciences, 2022 - mdpi.com
Microorganisms, such as bacteria, viruses, and fungi, and host cells, such as plants and
animals, have carbohydrate chains and lectins that reciprocally recognize one another. In …

Computational studies of snake venom toxins

PG Ojeda, D Ramírez, J Alzate-Morales, J Caballero… - Toxins, 2017 - mdpi.com
Most snake venom toxins are proteins, and participate to envenomation through a diverse
array of bioactivities, such as bleeding, inflammation, and pain, cytotoxic, cardiotoxic or …

Epithelial-to-mesenchymal transition antagonizes response to targeted therapies in lung cancer by suppressing BIM

KA Song, MJ Niederst, TL Lochmann, AN Hata… - Clinical Cancer …, 2018 - AACR
Purpose: Epithelial-to-mesenchymal transition (EMT) confers resistance to a number of
targeted therapies and chemotherapies. However, it has been unclear why EMT promotes …

Database commons: a catalog of worldwide biological databases

L Ma, D Zou, L Liu, H Shireen, AA Abbasi… - Genomics …, 2023 - academic.oup.com
Biological databases serve as a global fundamental infrastructure for the worldwide
scientific community, which dramatically aid the transformation of big data into knowledge …

Proteome-pI 2.0: proteome isoelectric point database update

LP Kozlowski - Nucleic acids research, 2022 - academic.oup.com
Abstract Proteome-pI 2.0 is an update of an online database containing predicted isoelectric
points and p K a dissociation constants of proteins and peptides. The isoelectric point—the …

[HTML][HTML] Interoperability and FAIRness through a novel combination of Web technologies

MD Wilkinson, R Verborgh, LOB da Silva Santos… - PeerJ Computer …, 2017 - peerj.com
Licence This is an open access article distributed under the terms of the Creative Commons
Attribution License, which permits unrestricted use, distribution, reproduction and adaptation …