Epigenetics for crop improvement in times of global change

I Kakoulidou, EV Avramidou, M Baránek… - Biology, 2021 - mdpi.com
Simple Summary Research on plant epigenetics aims to understand how endogenous,
biotic, and abiotic factors regulate plant development and growth independent of changes in …

Dynamic DNA methylation in plant growth and development

A Bartels, Q Han, P Nair, L Stacey, H Gaynier… - International journal of …, 2018 - mdpi.com
DNA methylation is an epigenetic modification required for transposable element (TE)
silencing, genome stability, and genomic imprinting. Although DNA methylation has been …

Site-specific manipulation of Arabidopsis loci using CRISPR-Cas9 SunTag systems

A Papikian, W Liu, J Gallego-Bartolomé… - Nature …, 2019 - nature.com
Understanding genomic functions requires site-specific manipulation of loci via efficient
protein effector targeting systems. However, few approaches for targeted manipulation of the …

Eukaryotic cytosine methyltransferases

MG Goll, TH Bestor - Annu. Rev. Biochem., 2005 - annualreviews.org
▪ Abstract Large-genome eukaryotes use heritable cytosine methylation to silence
promoters, especially those associated with transposons and imprinted genes. Cytosine …

Genome-wide high-resolution mapping and functional analysis of DNA methylation in Arabidopsis

X Zhang, J Yazaki, A Sundaresan, S Cokus, SWL Chan… - Cell, 2006 - cell.com
Cytosine methylation is important for transposon silencing and epigenetic regulation of
endogenous genes, although the extent to which this DNA modification functions to regulate …

Genetic and functional diversification of small RNA pathways in plants

Z Xie, LK Johansen, AM Gustafson, KD Kasschau… - PLoS …, 2004 - journals.plos.org
Multicellular eukaryotes produce small RNA molecules (approximately 21–24 nucleotides)
of two general types, microRNA (miRNA) and short interfering RNA (siRNA). They …

Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription

D Zilberman, M Gehring, RK Tran, T Ballinger… - Nature …, 2007 - nature.com
Cytosine methylation, a common form of DNA modification that antagonizes transcription, is
found at transposons and repeats in vertebrates, plants and fungi. Here we have mapped …

Inherited epigenetic variation—revisiting soft inheritance

EJ Richards - Nature Reviews Genetics, 2006 - nature.com
Phenotypic variation is traditionally parsed into components that are directed by genetic and
environmental variation. The line between these two components is blurred by inherited …

Assessing the impact of transgenerational epigenetic variation on complex traits

F Johannes, E Porcher, FK Teixeira… - PLoS …, 2009 - journals.plos.org
Loss or gain of DNA methylation can affect gene expression and is sometimes transmitted
across generations. Such epigenetic alterations are thus a possible source of heritable …

Requirement of CHROMOMETHYLASE3 for Maintenance of CpXpG Methylation

AM Lindroth, X Cao, JP Jackson, D Zilberman… - Science, 2001 - science.org
Epigenetic silenced alleles of the Arabidopsis SUPERMAN locus (the clark kent alleles) are
associated with dense hypermethylation at noncanonical cytosines (CpXpG and asymmetric …