[HTML][HTML] Laser capture microdissection: Big data from small samples

S Datta, L Malhotra, R Dickerson… - Histology and …, 2015 - ncbi.nlm.nih.gov
Any tissue is made up of a heterogeneous mix of spatially distributed cell types. In response
to any (patho) physiological cue, responses of each cell type in any given tissue may be …

Insights into conifer giga-genomes

AR De La Torre, I Birol, J Bousquet… - Plant …, 2014 - academic.oup.com
Insights from sequenced genomes of major land plant lineages have advanced research in
almost every aspect of plant biology. Until recently, however, assembled genome …

Spatial transcriptomic analysis of cryosectioned tissue samples with Geo-seq

J Chen, S Suo, PPL Tam, JDJ Han, G Peng, N Jing - Nature protocols, 2017 - nature.com
Conventional gene expression studies analyze multiple cells simultaneously or single cells,
for which the exact in vivo or in situ position is unknown. Although cellular heterogeneity can …

Integration of computational analysis and spatial transcriptomics in single-cell studies

R Wang, G Peng, PPL Tam… - Genomics, Proteomics & …, 2023 - academic.oup.com
Recent advances of single-cell transcriptomics technologies and allied computational
methodologies have revolutionized molecular cell biology. Meanwhile, pioneering …

Single-copy genes as molecular markers for phylogenomic studies in seed plants

Z Li, AR De La Torre, L Sterck… - Genome Biology and …, 2017 - academic.oup.com
Phylogenetic relationships among seed plant taxa, especially within the gymnosperms,
remain contested. In contrast to angiosperms, for which several genomic, transcriptomic and …

A revised view on the evolution of glutamine synthetase isoenzymes in plants

JM Valderrama‐Martín, F Ortigosa, C Ávila… - The Plant …, 2022 - Wiley Online Library
Glutamine synthetase (GS) is a key enzyme responsible for the incorporation of inorganic
nitrogen in the form of ammonium into the amino acid glutamine. In plants, two groups of …

Analysis of the WUSCHEL-RELATED HOMEOBOX gene family in Pinus pinaster: new insights into the gene family evolution

JM Alvarez, N Bueno, RA Cañas, C Avila… - Plant Physiology and …, 2018 - Elsevier
Abstract WUSCHEL-RELATED HOMEOBOX (WOX) genes are key players controlling stem
cells in plants and can be divided into three clades according to the time of their appearance …

Ray parenchymal cells contribute to lignification of tracheids in developing xylem of Norway spruce

O Blokhina, T Laitinen, Y Hatakeyama… - Plant …, 2019 - academic.oup.com
A comparative transcriptomic study and a single-cell metabolome analysis were combined
to determine whether parenchymal ray cells contribute to the biosynthesis of monolignols in …

Molecular fundamentals of nitrogen uptake and transport in trees

V Castro-Rodríguez, RA Cañas… - Journal of …, 2017 - academic.oup.com
Nitrogen (N) is frequently a limiting factor for tree growth and development. Because N
availability is extremely low in forest soils, trees have evolved mechanisms to acquire and …

Cyberinfrastructure to improve forest health and productivity: the role of tree databases in connecting genomes, phenomes, and the environment

JL Wegrzyn, MA Staton, NR Street, D Main… - Frontiers in plant …, 2019 - frontiersin.org
Despite tremendous advancements in high throughput sequencing, the vast majority of tree
genomes, and in particular, forest trees, remain elusive. Although primary databases store …