F2C2: a fast tool for the computation of flux coupling in genome-scale metabolic networks

A Larhlimi, L David, J Selbig, A Bockmayr - BMC bioinformatics, 2012 - Springer
Background Flux coupling analysis (FCA) has become a useful tool in the constraint-based
analysis of genome-scale metabolic networks. FCA allows detecting dependencies between …

[HTML][HTML] Detection of Hopf bifurcations in chemical reaction networks using convex coordinates

H Errami, M Eiswirth, D Grigoriev, WM Seiler… - Journal of …, 2015 - Elsevier
We present efficient algorithmic methods to detect Hopf bifurcation fixed points in chemical
reaction networks with symbolic rate constants, thereby yielding information about the …

FFCA: a feasibility-based method for flux coupling analysis of metabolic networks

L David, SA Marashi, A Larhlimi, B Mieth… - BMC …, 2011 - Springer
Background Flux coupling analysis (FCA) is a useful method for finding dependencies
between fluxes of a metabolic network at steady-state. FCA classifies reactions into subsets …

A mathematical approach to emergent properties of metabolic networks: partial coupling relations, hyperarcs and flux ratios

SA Marashi, M Tefagh - Journal of theoretical biology, 2014 - Elsevier
Emergent properties in systems biology are those which arise only when the biological
system passes a certain level of complexity. In this study, we introduce some of the emergent …

Metabolic networks, thermodynamic constraints, and matroid theory

AC Reimers - 2014 - refubium.fu-berlin.de
Biologische Experimente sind zeitraubend und teuer. Deshalb werden Computer immer
häufiger benutzt um solche Experimente zu bestimmen, die am ehesten erfolgreich sind und …

Computing Hopf bifurcations in chemical reaction networks using reaction coordinates

H Errami, WM Seiler, M Eiswirth, A Weber - Computer Algebra in Scientific …, 2012 - Springer
The analysis of dynamic of chemical reaction networks by computing Hopf bifurcation is a
method to understand the qualitative behavior of the network due to its relation to the …

Constraint-based analysis of substructures of metabolic networks

SA Marashi - 2011 - refubium.fu-berlin.de
Constraintbasierte Methoden (CBM) sind vielversprechende Werkzeuge für die Analyse von
metabolischen Netzwerken, da sie keine detaillierte Kenntnis der biochemischen …

Déterminisme nutritionnel et génétique de la teneur en lipides musculaires chez la truite arc-en-ciel (Oncorhynchus mykiss)[Texte imprimé]: étude par analyse de l' …

CI Kolditz - 2008 - archimer.ifremer.fr
the objective of the study was to identify genes and proteins that are involved in the control
of muscle fat deposition in rainbow trout. we analyzed the combined effects exerted by …

[图书][B] Scalable computation and analysis of elementary flux modes in metabolic networks

D Jevremovic - 2013 - search.proquest.com
The full in silico reconstruction of the genome-scale cellular metabolic networks in the recent
years was enabled and supported with the sequencing of genomic and transcriptomic data …

Propuestas y análisis de técnicas para la generación de subconjuntos significativos de soluciones de redes metabólicas

JF Hidalgo Céspedes - Proyecto de investigación:, 2021 - digitum.um.es
El estudio de redes metabólicas aplicado a la Biotecnología ya la investigación de
enfermedades es un tema de investigación de plena actualidad en nuestros días. La …