Risk factors of severe COVID-19: a review of host, viral and environmental factors

L Zsichla, V Müller - Viruses, 2023 - mdpi.com
The clinical course and outcome of COVID-19 are highly variable, ranging from
asymptomatic infections to severe disease and death. Understanding the risk factors of …

Standardized multi-omics of Earth's microbiomes reveals microbial and metabolite diversity

JP Shaffer, LF Nothias, LR Thompson, JG Sanders… - Nature …, 2022 - nature.com
Despite advances in sequencing, lack of standardization makes comparisons across studies
challenging and hampers insights into the structure and function of microbial communities …

The microbiota-mediated dietary and nutritional interventions for COVID-19

A Gasmi, T Tippairote, PK Mujawdiya, M Peana… - Clinical …, 2021 - Elsevier
Worldwide, scientists are looking for specific treatment for COVID-19. Apart from the antiviral
approach, the interventions to support healthy immune responses to the virus are feasible …

[HTML][HTML] Could SARS-CoV-2 have bacteriophage behavior or induce the activity of other bacteriophages?

C Brogna, B Brogna, DR Bisaccia, F Lauritano… - Vaccines, 2022 - mdpi.com
SARS-CoV-2 has become one of the most studied viruses of the last century. It was
assumed that the only possible host for these types of viruses was mammalian eukaryotic …

Severe COVID-19 is associated with an altered upper respiratory tract microbiome

MH Shilts, C Rosas-Salazar, BA Strickland… - Frontiers in cellular …, 2022 - frontiersin.org
Background The upper respiratory tract (URT) is the portal of entry of severe acute
respiratory syndrome coronavirus 2 (SARS-CoV-2), and SARS-CoV-2 likely interacts with …

Alterations in the gut microbiome and its metabolites are associated with the immune response to mucosal immunization with Lactiplantibacillus plantarum-displaying …

IC Hwang, R Vasquez, JH Song… - Frontiers in Cellular …, 2023 - frontiersin.org
Lactic acid bacteria (LAB) expressing foreign antigens have great potential as mucosal
vaccines. Our previous study reported that recombinant Lactiplantibacillus plantarum SK156 …

EMPress enables tree-guided, interactive, and exploratory analyses of multi-omic data sets

K Cantrell, MW Fedarko, G Rahman, D McDonald… - …, 2021 - Am Soc Microbiol
Standard workflows for analyzing microbiomes often include the creation and curation of
phylogenetic trees. Here we present EMPress, an interactive web tool for visualizing trees in …

Uncover a microbiota signature of upper respiratory tract in patients with SARS-CoV-2+

M Bellato, M Cappellato, F Longhin, C Del Vecchio… - Scientific Reports, 2023 - nature.com
The outbreak of Coronavirus disease 2019 (COVID-19), caused by SARS-CoV-2, forced us
to face a pandemic with unprecedented social, economic, and public health consequences …

Analysis of metagenomic data

S Liu, JS Rodriguez, V Munteanu… - Nature Reviews …, 2025 - nature.com
Metagenomics has revolutionized our understanding of microbial communities, offering
unprecedented insights into their genetic and functional diversity across Earth's diverse …

A comprehensive review of the analysis and integration of omics data for SARS-CoV-2 and COVID-19

Z Zhu, S Zhang, P Wang, X Chen, J Bi… - Briefings in …, 2022 - academic.oup.com
Since the first report of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) in
December 2019, over 100 million people have been infected by COVID-19, millions of …