A-to-I RNA editing—immune protector and transcriptome diversifier

E Eisenberg, EY Levanon - Nature Reviews Genetics, 2018 - nature.com
Modifications of RNA affect its function and stability. RNA editing is unique among these
modifications because it not only alters the cellular fate of RNA molecules but also alters …

[PDF][PDF] High-throughput sequencing technologies

JA Reuter, DV Spacek, MP Snyder - Molecular cell, 2015 - cell.com
The human genome sequence has profoundly altered our understanding of biology, human
diversity, and disease. The path from the first draft sequence to our nascent era of personal …

Evidence for host-dependent RNA editing in the transcriptome of SARS-CoV-2

S Di Giorgio, F Martignano, MG Torcia, G Mattiuz… - Science …, 2020 - science.org
The COVID-19 outbreak has become a global health risk, and understanding the response
of the host to the SARS-CoV-2 virus will help to combat the disease. RNA editing by host …

A-to-I editing of coding and non-coding RNAs by ADARs

K Nishikura - Nature reviews Molecular cell biology, 2016 - nature.com
Adenosine deaminases acting on RNA (ADARs) convert adenosine to inosine in double-
stranded RNA. This A-to-I editing occurs not only in protein-coding regions of mRNAs, but …

Dynamic landscape and regulation of RNA editing in mammals

MH Tan, Q Li, R Shanmugam, R Piskol, J Kohler… - Nature, 2017 - nature.com
Abstract Adenosine-to-inosine (A-to-I) RNA editing is a conserved post-transcriptional
mechanism mediated by ADAR enzymes that diversifies the transcriptome by altering …

Pseudouridine profiling reveals regulated mRNA pseudouridylation in yeast and human cells

TM Carlile, MF Rojas-Duran, B Zinshteyn, H Shin… - Nature, 2014 - nature.com
Post-transcriptional modification of RNA nucleosides occurs in all living organisms.
Pseudouridine, the most abundant modified nucleoside in non-coding RNAs, enhances the …

Epitranscriptome sequencing technologies: decoding RNA modifications

X Li, X Xiong, C Yi - Nature methods, 2017 - nature.com
In recent years, major breakthroughs in RNA-modification-mediated regulation of gene
expression have been made, leading to the emerging field of epitranscriptomics. Our …

[HTML][HTML] Large-scale de novo DNA synthesis: technologies and applications

S Kosuri, GM Church - Nature methods, 2014 - nature.com
For over 60 years, the synthetic production of new DNA sequences has helped researchers
understand and engineer biology. Here we summarize methods and caveats for the de novo …

Fluorescent in situ sequencing (FISSEQ) of RNA for gene expression profiling in intact cells and tissues

JH Lee, ER Daugharthy, J Scheiman, R Kalhor… - Nature protocols, 2015 - nature.com
Abstract RNA-sequencing (RNA-seq) measures the quantitative change in gene expression
over the whole transcriptome, but it lacks spatial context. In contrast, in situ hybridization …

Breakage of cytoplasmic chromosomes by pathological DNA base excision repair

S Tang, E Stokasimov, Y Cui, D Pellman - Nature, 2022 - nature.com
Chromothripsis is a catastrophic mutational process that promotes tumorigenesis and
causes congenital disease,,–. Chromothripsis originates from aberrations of nuclei called …