ER-phagy: mechanisms, regulation, and diseases connected to the lysosomal clearance of the endoplasmic reticulum

F Reggiori, M Molinari - Physiological reviews, 2022 - journals.physiology.org
ER-phagy (reticulophagy) defines the degradation of portions of the endoplasmic reticulum
(ER) within lysosomes or vacuoles. It is part of the self-digestion (ie, autophagic) programs …

Autophagy assays for biological discovery and therapeutic development

N Mizushima, LO Murphy - Trends in biochemical sciences, 2020 - cell.com
Autophagy is a lysosome-dependent intracellular degradation system required for various
physiological processes and can be dysregulated in human disease. To understand its …

p53 inhibits CRISPR–Cas9 engineering in human pluripotent stem cells

RJ Ihry, KA Worringer, MR Salick, E Frias, D Ho… - Nature medicine, 2018 - nature.com
CRISPR/Cas9 has revolutionized our ability to engineer genomes and conduct genome-
wide screens in human cells,–. Whereas some cell types are amenable to genome …

Reovirus infection triggers inflammatory responses to dietary antigens and development of celiac disease

R Bouziat, R Hinterleitner, JJ Brown… - Science, 2017 - science.org
Viral infections have been proposed to elicit pathological processes leading to the initiation
of T helper 1 (TH1) immunity against dietary gluten and celiac disease (CeD). To test this …

A genome-wide ER-phagy screen highlights key roles of mitochondrial metabolism and ER-resident UFMylation

JR Liang, E Lingeman, T Luong, S Ahmed, M Muhar… - Cell, 2020 - cell.com
Selective autophagy of organelles is critical for cellular differentiation, homeostasis, and
organismal health. Autophagy of the ER (ER-phagy) is implicated in human neuropathy but …

DCAF1-based PROTACs with activity against clinically validated targets overcoming intrinsic-and acquired-degrader resistance

M Schröder, M Renatus, X Liang, F Meili… - Nature …, 2024 - nature.com
Targeted protein degradation (TPD) mediates protein level through small molecule induced
redirection of E3 ligases to ubiquitinate neo-substrates and mark them for proteasomal …

[HTML][HTML] Genome-wide CRISPR-Cas9 screens expose genetic vulnerabilities and mechanisms of temozolomide sensitivity in glioblastoma stem cells

G MacLeod, DA Bozek, N Rajakulendran, V Monteiro… - Cell reports, 2019 - cell.com
Glioblastoma therapies have remained elusive due to limitations in understanding
mechanisms of growth and survival of the tumorigenic population. Using CRISPR-Cas9 …

YAP, but not RSPO-LGR4/5, signaling in biliary epithelial cells promotes a ductular reaction in response to liver injury

L Planas-Paz, T Sun, M Pikiolek, NR Cochran… - Cell stem cell, 2019 - cell.com
Biliary epithelial cells (BECs) form bile ducts in the liver and are facultative liver stem cells
that establish a ductular reaction (DR) to support liver regeneration following injury. Liver …

Genome-wide CRISPR screen identifies TMEM41B as a gene required for autophagosome formation

K Morita, Y Hama, T Izume, N Tamura, T Ueno… - Journal of Cell …, 2018 - rupress.org
Macroautophagy is an intracellular degradation process that requires multiple autophagy-
related (ATG) genes. In this study, we performed a genome-wide screen using the …

ER-phagy responses in yeast, plants, and mammalian cells and their crosstalk with UPR and ERAD

M Molinari - Developmental Cell, 2021 - cell.com
ER-phagy, literally endoplasmic reticulum (ER)-eating, defines the constitutive or regulated
clearance of ER portions within metazoan endolysosomes or yeast and plant vacuoles. The …