Bacterial transformation: distribution, shared mechanisms and divergent control
C Johnston, B Martin, G Fichant, P Polard… - Nature Reviews …, 2014 - nature.com
Natural bacterial transformation involves the internalization and chromosomal integration of
DNA and has now been documented in∼ 80 species. Recent advances have established …
DNA and has now been documented in∼ 80 species. Recent advances have established …
Recombination in viruses: mechanisms, methods of study, and evolutionary consequences
Recombination is a pervasive process generating diversity in most viruses. It joins variants
that arise independently within the same molecule, creating new opportunities for viruses to …
that arise independently within the same molecule, creating new opportunities for viruses to …
IQ-TREE 2: new models and efficient methods for phylogenetic inference in the genomic era
Abstract IQ-TREE (http://www. iqtree. org, last accessed February 6, 2020) is a user-friendly
and widely used software package for phylogenetic inference using maximum likelihood …
and widely used software package for phylogenetic inference using maximum likelihood …
Human seasonal influenza under COVID-19 and the potential consequences of influenza lineage elimination
Annual epidemics of seasonal influenza cause hundreds of thousands of deaths, high levels
of morbidity, and substantial economic loss. Yet, global influenza circulation has been …
of morbidity, and substantial economic loss. Yet, global influenza circulation has been …
Systematic evaluation of horizontal gene transfer between eukaryotes and viruses
Gene exchange between viruses and their hosts acts as a key facilitator of horizontal gene
transfer and is hypothesized to be a major driver of evolutionary change. Our understanding …
transfer and is hypothesized to be a major driver of evolutionary change. Our understanding …
Revisionary systematics of Octocorallia (Cnidaria: Anthozoa) guided by phylogenomics
CS McFadden, LP Van Ofwegen… - Bulletin of the Society of …, 2022 - bhacjournal.org
The anthozoan sub-class Octocorallia includes over 3500 nominal species of soft corals and
gorgonian sea fans, many of which serve as critical foundation species in benthic marine …
gorgonian sea fans, many of which serve as critical foundation species in benthic marine …
W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis
J Trifinopoulos, LT Nguyen… - Nucleic acids …, 2016 - academic.oup.com
This article presents W-IQ-TREE, an intuitive and user-friendly web interface and server for
IQ-TREE, an efficient phylogenetic software for maximum likelihood analysis. W-IQ-TREE …
IQ-TREE, an efficient phylogenetic software for maximum likelihood analysis. W-IQ-TREE …
The interrelationships of land plants and the nature of the ancestral embryophyte
The evolutionary emergence of land plant body plans transformed the planet. However, our
understanding of this formative episode is mired in the uncertainty associated with the …
understanding of this formative episode is mired in the uncertainty associated with the …
Phylogenetic analysis of SARS-CoV-2 data is difficult
Numerous studies covering some aspects of SARS-CoV-2 data analyses are being
published on a daily basis, including a regularly updated phylogeny on nextstrain. org. Here …
published on a daily basis, including a regularly updated phylogeny on nextstrain. org. Here …
Combining phylogenomic and supermatrix approaches, and a time-calibrated phylogeny for squamate reptiles (lizards and snakes) based on 52 genes and 4162 …
Y Zheng, JJ Wiens - Molecular phylogenetics and evolution, 2016 - Elsevier
Two common approaches for estimating phylogenies in species-rich groups are to:(i)
sample many loci for few species (eg phylogenomic approach), or (ii) sample many species …
sample many loci for few species (eg phylogenomic approach), or (ii) sample many species …