Mitigating off‐target effects of small RNAs: conventional approaches, network theory and artificial intelligence

Z Bereczki, B Benczik, OM Balogh… - British Journal of …, 2025 - Wiley Online Library
Three types of highly promising small RNA therapeutics, namely, small interfering RNAs
(siRNAs), microRNAs (miRNAs) and the RNA subtype of antisense oligonucleotides (ASOs) …

Gauging tensor networks with belief propagation

J Tindall, M Fishman - SciPost Physics, 2023 - scipost.org
Effectively compressing and optimizing tensor networks requires reliable methods for fixing
the latent degrees of freedom of the tensors, known as the gauge. Here we introduce a new …

Belief propagation for networks with loops

A Kirkley, GT Cantwell, MEJ Newman - Science Advances, 2021 - science.org
Belief propagation is a widely used message passing method for the solution of probabilistic
models on networks such as epidemic models, spin models, and Bayesian graphical …

Message passing methods on complex networks

MEJ Newman - Proceedings of the Royal Society A, 2023 - royalsocietypublishing.org
Networks and network computations have become a primary mathematical tool for analyzing
the structure of many kinds of complex systems, ranging from the Internet and transportation …

Message-passing approach to epidemic tracing and mitigation with apps

G Bianconi, H Sun, G Rapisardi, A Arenas - Physical Review Research, 2021 - APS
With the hit of new pandemic threats, scientific frameworks are needed to understand the
unfolding of the epidemic. The use of mobile apps that are able to trace contacts is of utmost …

Theory of percolation on hypergraphs

G Bianconi, SN Dorogovtsev - Physical Review E, 2024 - APS
Hypergraphs capture the higher-order interactions in complex systems and always admit a
factor graph representation, consisting of a bipartite network of nodes and hyperedges. As …

Network comparison and the within-ensemble graph distance

H Hartle, B Klein, S McCabe… - … of the Royal …, 2020 - royalsocietypublishing.org
Quantifying the differences between networks is a challenging and ever-present problem in
network science. In recent years, a multitude of diverse, ad hoc solutions to this problem …

Percolation on feature-enriched interconnected systems

O Artime, M De Domenico - Nature communications, 2021 - nature.com
Percolation is an emblematic model to assess the robustness of interconnected systems
when some of their components are corrupted. It is usually investigated in simple scenarios …

Message-passing approach to higher-order percolation

H Peng, C Qian, D Zhao, M Zhong, J Han… - Physica A: Statistical …, 2024 - Elsevier
Hypergraph describes real-world networks widely because it captures pairwise and multiple
nodes' interactions. Various kinds of damages, such as network attacks, hardware …

Source inference for misinformation spreading on hypergraphs

X Yu, Y Nie, W Li, G Luo, T Lin, W Wang - Chaos, Solitons & Fractals, 2024 - Elsevier
Source inference aims at revealing the seed of the misinformation spreading on social
networks, and attracted great attention in the field of network science and cybersecurity …