Heuristics and metaheuristics for biological network alignment: A review

L Ma, Z Shao, L Li, J Huang, S Wang, Q Lin, J Li… - Neurocomputing, 2022 - Elsevier
In recent years, with the emergence of big-data and high-throughput biological analyses,
massive biological data have been generated and accessed, and many heuristic and …

Set-based discrete particle swarm optimization and its applications: a survey

WN Chen, DZ Tan - Frontiers of Computer Science, 2018 - Springer
Particle swarm optimization (PSO) is one of the most popular population-based stochastic
algorithms for solving complex optimization problems. While PSO is simple and effective, it is …

Structural characterization of ZnO: N thin films using the optical optimization method

R Hassanzadeh, A Siabi-Garjan… - Materials Research …, 2019 - iopscience.iop.org
Recently, we introduced a method based on Bruggeman homogenization formalism in
assistance with particle swarm optimization (PSO) to predict the optimized structure of the …

Optimized artificial neural network to improve the accuracy of estimated fault impedances and distances for underground distribution system

K Naidu, MS Ali, AH Abu Bakar, CK Tan, H Arof… - Plos one, 2020 - journals.plos.org
This paper proposes an approach to accurately estimate the impedance value of a high
impedance fault (HIF) and the distance from its fault location for a distribution system. Based …

Multi-neighborhood learning for global alignment in biological networks

L Ma, S Wang, Q Lin, J Li, Z You… - … /ACM transactions on …, 2020 - ieeexplore.ieee.org
The global alignment of biological networks (GABN) aims to find an optimal alignment
between proteins across species, such that both the biological structures and the topological …

[HTML][HTML] Decomposition-based multi-objective optimization approach for PPI network alignment

M Menor-Flores, MA Vega-Rodríguez - Knowledge-Based Systems, 2022 - Elsevier
The alignment of protein–protein interaction (PPI) networks is in the spotlight of the research
in bioinformatics. The main goal is to find structural or functional complexes that are …

MOMEA: Multi-Objective Mutation-based Evolutionary Algorithm for the alignment of protein networks

I Carrasco-Santano, MA Vega-Rodríguez - Applied Soft Computing, 2022 - Elsevier
The alignment of protein networks between different species has become a topic of
considerable interest in recent years. To perform such alignments between two protein …

The protein-protein interaction network alignment using recurrent neural network

E Mahdipour, M Ghasemzadeh - Medical & Biological Engineering & …, 2021 - Springer
The main challenge of biological network alignment is that the problem of finding the
alignments in two graphs is NP-hard. The discovery of protein-protein interaction (PPI) …

Power allocation for SE maximization in uplink massive MIMO system under minimum rate constraint

W Hui, Y Xiangbin, L Fuyuan… - China Communications, 2024 - ieeexplore.ieee.org
In this paper, we optimize the spectrum efficiency (SE) of uplink massive multiple-input
multiple-output (MIMO) system with imperfect channel state information (CSI) over Rayleigh …

Wearable accelerometer layout optimization for activity recognition based on swarm intelligence and user preference

C Xia, Y Sugiura - IEEE Access, 2021 - ieeexplore.ieee.org
Wearable intelligent systems that recognize the daily activities of humans have significantly
contributed to many useful applications. However, in practical wearable applications, the …