Prevalence and adaptive impact of introgression

NB Edelman, J Mallet - Annual Review of Genetics, 2021 - annualreviews.org
Alleles that introgress between species can influence the evolutionary and ecological fate of
species exposed to novel environments. Hybrid offspring of different species are often unfit …

Insights from genomes into the evolutionary importance and prevalence of hybridization in nature

SA Taylor, EL Larson - Nature ecology & evolution, 2019 - nature.com
Hybridization is an evolutionary phenomenon that has fascinated biologists for centuries.
Prior to the advent of whole-genome sequencing, it was clear that hybridization had played …

Dsuite ‐ Fast D‐statistics and related admixture evidence from VCF files

M Malinsky, M Matschiner… - Molecular ecology …, 2021 - Wiley Online Library
Patterson's D, also known as the ABBA‐BABA statistic, and related statistics such as the f4‐
ratio, are commonly used to assess evidence of gene flow between populations or closely …

Widespread introgression across a phylogeny of 155 Drosophila genomes

A Suvorov, BY Kim, J Wang, EE Armstrong, D Peede… - Current Biology, 2022 - cell.com
Genome-scale sequence data have invigorated the study of hybridization and introgression,
particularly in animals. However, outside of a few notable cases, we lack systematic tests for …

[HTML][HTML] BlastKOALA and GhostKOALA: KEGG tools for functional characterization of genome and metagenome sequences

M Kanehisa, Y Sato, K Morishima - Journal of molecular biology, 2016 - Elsevier
BlastKOALA and GhostKOALA are automatic annotation servers for genome and
metagenome sequences, which perform KO (KEGG Orthology) assignments to characterize …

The genomic consequences of hybridization

BM Moran, C Payne, Q Langdon, DL Powell… - Elife, 2021 - elifesciences.org
In the past decade, advances in genome sequencing have allowed researchers to uncover
the history of hybridization in diverse groups of species, including our own. Although the …

Ancient hybridization fuels rapid cichlid fish adaptive radiations

JI Meier, DA Marques, S Mwaiko, CE Wagner… - Nature …, 2017 - nature.com
Understanding why some evolutionary lineages generate exceptionally high species
diversity is an important goal in evolutionary biology. Haplochromine cichlid fishes of Africa's …

Genomic architecture and introgression shape a butterfly radiation

NB Edelman, PB Frandsen, M Miyagi, B Clavijo… - Science, 2019 - science.org
We used 20 de novo genome assemblies to probe the speciation history and architecture of
gene flow in rapidly radiating Heliconius butterflies. Our tests to distinguish incomplete …

Interpreting the genomic landscape of speciation: a road map for finding barriers to gene flow

M Ravinet, R Faria, RK Butlin, J Galindo… - Journal of …, 2017 - academic.oup.com
Speciation, the evolution of reproductive isolation among populations, is continuous,
complex, and involves multiple, interacting barriers. Until it is complete, the effects of this …

Conservation of biodiversity in the genomics era

MA Supple, B Shapiro - Genome biology, 2018 - Springer
Abstract “Conservation genomics” encompasses the idea that genome-scale data will
improve the capacity of resource managers to protect species. Although genetic approaches …