The ecological roles of bacterial chemotaxis

JM Keegstra, F Carrara, R Stocker - Nature Reviews Microbiology, 2022 - nature.com
How bacterial chemotaxis is performed is much better understood than why. Traditionally,
chemotaxis has been understood as a foraging strategy by which bacteria enhance their …

Shaping bacterial gene expression by physiological and proteome allocation constraints

M Scott, T Hwa - Nature Reviews Microbiology, 2023 - nature.com
Networks of molecular regulators are often the primary objects of focus in the study of gene
regulation, with the machinery of protein synthesis tacitly relegated to the background …

Genome content predicts the carbon catabolic preferences of heterotrophic bacteria

M Gralka, S Pollak, OX Cordero - Nature Microbiology, 2023 - nature.com
Heterotrophic bacteria—bacteria that utilize organic carbon sources—are taxonomically and
functionally diverse across environments. It is challenging to map metabolic interactions and …

Reconfiguration of metabolic fluxes in Pseudomonas putida as a response to sub-lethal oxidative stress

PI Nikel, T Fuhrer, M Chavarría… - The ISME …, 2021 - academic.oup.com
As a frequent inhabitant of sites polluted with toxic chemicals, the soil bacterium and plant-
root colonizer Pseudomonas putida can tolerate high levels of endogenous and exogenous …

Stringent response ensures the timely adaptation of bacterial growth to nutrient downshift

M Zhu, X Dai - Nature Communications, 2023 - nature.com
Timely adaptation to nutrient downshift is crucial for bacteria to maintain fitness during feast
and famine cycle in the natural niche. However, the molecular mechanism that ensures the …

Coexisting ecotypes in long-term evolution emerged from interacting trade-offs

A Mukherjee, J Ealy, Y Huang, NC Benites… - nature …, 2023 - nature.com
Evolution of complex communities of coexisting microbes remains poorly understood. The
long-term evolution experiment on Escherichia coli (LTEE) revealed the spontaneous …

Pseudomonas aeruginosa breaches respiratory epithelia through goblet cell invasion in a microtissue model

AL Swart, BJ Laventie, R Sütterlin, T Junne… - Nature …, 2024 - nature.com
Pseudomonas aeruginosa, a leading cause of severe hospital-acquired pneumonia, causes
infections with up to 50% mortality rates in mechanically ventilated patients. Despite some …

A genetic switch controls Pseudomonas aeruginosa surface colonization

C Manner, R Dias Teixeira, D Saha… - Nature …, 2023 - nature.com
Efficient colonization of mucosal surfaces is essential for opportunistic pathogens like
Pseudomonas aeruginosa, but how bacteria collectively and individually adapt to optimize …

Suboptimal resource allocation in changing environments constrains response and growth in bacteria

R Balakrishnan, RT de Silva, T Hwa… - Molecular systems …, 2021 - embopress.org
To respond to fluctuating conditions, microbes typically need to synthesize novel proteins.
As this synthesis relies on sufficient biosynthetic precursors, microbes must devise effective …

Enzyme expression kinetics by Escherichia coli during transition from rich to minimal media depends on proteome reserves

C Wu, M Mori, M Abele, A Banaei-Esfahani… - Nature …, 2023 - nature.com
Bacterial fitness depends on adaptability to changing environments. In rich growth medium,
which is replete with amino acids, Escherichia coli primarily expresses protein synthesis …