Targeting nonsense mutations in diseases with translational read-through-inducing drugs (TRIDs)

K Nagel-Wolfrum, F Möller, I Penner, T Baasov… - BioDrugs, 2016 - Springer
In recent years, remarkable advances in the ability to diagnose genetic disorders have been
made. The identification of disease-causing genes allows the development of gene-specific …

Challenges and current status of computational methods for docking small molecules to nucleic acids

J Luo, W Wei, J Waldispühl, N Moitessier - European journal of medicinal …, 2019 - Elsevier
Since the development of the first docking program in 1982, the use of docking-based in
silico screening for potentially bioactive molecule discovery has become a common strategy …

Toward a rationale for the PTC124 (Ataluren) promoted readthrough of premature stop codons: a computational approach and GFP-reporter cell-based assay

L Lentini, R Melfi, A Di Leonardo, A Spinello… - Molecular …, 2014 - ACS Publications
The presence in the mRNA of premature stop codons (PTCs) results in protein truncation
responsible for several inherited (genetic) diseases. A well-known example of these …

Properties of non-aminoglycoside compounds used to stimulate translational readthrough of PTC mutations in primary ciliary dyskinesia

M Dabrowski, Z Bukowy-Bieryllo, CL Jackson… - International journal of …, 2021 - mdpi.com
Primary ciliary dyskinesia (PCD) is a rare disease with autosomal recessive inheritance,
caused mostly by bi-allelic gene mutations that impair motile cilia structure and function …

Effectively selecting aptamers for targeting aromatic biogenic amines and their application in aptasensing establishment

N Duan, M Song, W Mi, Z Wang… - Journal of Agricultural and …, 2021 - ACS Publications
It is necessary to detect the biogenic amine (BA) content in food due to their toxicological
effects and their role as an index of freshness for protein-rich foods. Aptamer-based …

Molecular dynamics simulation of a RNA aptasensor

M Ruan, M Seydou, V Noel, B Piro… - The Journal of …, 2017 - ACS Publications
Single-stranded RNA aptamers have emerged as novel biosensor tools. However, the
immobilization procedure of the aptamer onto a surface generally induces a loss of affinity …

Interaction of gentamicin polycation with model and cell membranes

E Kovács, T Savopol, MM Iordache, L Săplăcan… - …, 2012 - Elsevier
The interaction of positively-charged antibiotic gentamicin with cell membranes was studied
to determine if any changes in membrane organization were induced by the drug. Opossum …

RNA structural differentiation: opportunities with pattern recognition

CS Eubanks, AE Hargrove - Biochemistry, 2018 - ACS Publications
Our awareness and appreciation of the many regulatory roles of RNA have dramatically
increased in the past decade. This understanding, in addition to the impact of RNA in many …

Indole alkaloids from the Marquesan plant Rauvolfia nukuhivensis and their effects on ion channels

NJ Martin, SF Ferreiro, F Barbault, M Nicolas… - Phytochemistry, 2015 - Elsevier
In addition to the already reported nukuhivensiums 1 and 2, 11 indole alkaloids were
isolated from the bark of the plant Rauvolfia nukuhivensis, growing in the Marquesas …

Target flexibility in RNA− ligand docking modeled by elastic potential grids

DM Krüger, J Bergs, S Kazemi… - ACS medicinal chemistry …, 2011 - ACS Publications
The highly flexible nature of RNA provides a formidable challenge for structure-based drug
design approaches that target RNA. We introduce an approach for modeling target …