Fungal evolutionary genomics provides insight into the mechanisms of adaptive divergence in eukaryotes

P Gladieux, J Ropars, H Badouin, A Branca… - Molecular …, 2014 - Wiley Online Library
Fungi are ideal model organisms for dissecting the genomic bases of adaptive divergence in
eukaryotes. They have simple morphologies and small genomes, occupy contrasting, well …

Bioinformatic detection of positive selection pressure in plant pathogens: the neutral theory of molecular sequence evolution in action

MC Derbyshire - Frontiers in Microbiology, 2020 - frontiersin.org
The genomes of plant pathogenic fungi and oomycetes are often exposed to strong positive
selection pressure. During speciation, shifts in host range and preference can lead to major …

The Role of Selection in Shaping Diversity of Natural M. tuberculosis Populations

CS Pepperell, AM Casto, A Kitchen, JM Granka… - PLoS …, 2013 - journals.plos.org
Mycobacterium tuberculosis (M. tb), the cause of tuberculosis (TB), is estimated to infect a
new host every second. While analyses of genetic data from natural populations of M. tb …

Deciphering Genome Content and Evolutionary Relationships of Isolates from the Fungus Magnaporthe oryzae Attacking Different Host Plants

H Chiapello, L Mallet, C Guerin… - Genome biology and …, 2015 - academic.oup.com
Deciphering the genetic bases of pathogen adaptation to its host is a key question in
ecology and evolution. To understand how the fungus Magnaporthe oryzae adapts to …

Chaos of Rearrangements in the Mating-Type Chromosomes of the Anther-Smut Fungus Microbotryum lychnidis-dioicae

H Badouin, ME Hood, J Gouzy, G Aguileta… - Genetics, 2015 - academic.oup.com
Sex chromosomes in plants and animals and fungal mating-type chromosomes often show
exceptional genome features, with extensive suppression of homologous recombination and …

Genetic dissection of vitamin E biosynthesis in tomato

J Almeida, L Quadrana, R Asís, N Setta… - Journal of …, 2011 - academic.oup.com
Vegetables are critical for human health as they are a source of multiple vitamins including
vitamin E (VTE). In plants, the synthesis of VTE compounds, tocopherol and tocotrienol …

The genomic determinants of adaptive evolution in a fungal pathogen

J Grandaubert, JY Dutheil, EH Stukenbrock - Evolution Letters, 2019 - academic.oup.com
Unravelling the strength, frequency, and distribution of selective variants along the genome
as well as the underlying factors shaping this distribution are fundamental goals of …

Positively Selected Effector Genes and Their Contribution to Virulence in the Smut Fungus Sporisorium reilianum

G Schweizer, K Münch, G Mannhaupt… - Genome biology and …, 2018 - academic.oup.com
Plants and fungi display a broad range of interactions in natural and agricultural ecosystems
ranging from symbiosis to parasitism. These ecological interactions result in coevolution …

Cause and effectors: Whole-genome comparisons reveal shared but rapidly evolving effector sets among host-specific plant-castrating fungi

WC Beckerson, RC Rodríguez de la Vega… - MBio, 2019 - Am Soc Microbiol
Plant pathogens utilize a portfolio of secreted effectors to successfully infect and manipulate
their hosts. It is, however, still unclear whether changes in secretomes leading to host …

Natural selection on coding and noncoding DNA sequences is associated with virulence genes in a plant pathogenic fungus

GE Rech, JM Sanz-Martín, M Anisimova… - Genome biology and …, 2014 - academic.oup.com
Natural selection leaves imprints on DNA, offering the opportunity to identify functionally
important regions of the genome. Identifying the genomic regions affected by natural …