The Chicken Pan-Genome Reveals Gene Content Variation and a Promoter Region Deletion in IGF2BP1 Affecting Body Size

K Wang, H Hu, Y Tian, J Li, A Scheben… - Molecular biology …, 2021 - academic.oup.com
Domestication and breeding have reshaped the genomic architecture of chicken, but the
retention and loss of genomic elements during these evolutionary processes remain …

[HTML][HTML] The study of selection signature and its applications on identification of candidate genes using whole genome sequencing data in chicken—a review

SF Bello, RA Lawal, AC Adeola, Q Nie - Poultry science, 2023 - Elsevier
Chicken is a major source of protein for the increasing human population and is useful for
research purposes. There are almost 1,600 distinct regional breeds of chicken across the …

[HTML][HTML] A combination of genome-wide association study and selection signature analysis dissects the genetic architecture underlying bone traits in chickens

YD Li, X Liu, ZW Li, WJ Wang, YM Li, ZP Cao, P Luan… - Animal, 2021 - Elsevier
The bones of chicken play an important role in supporting and protecting the body. The
growth and development of bones have a substantial influence on the health and production …

Association analysis of production traits of Japanese quail (Coturnix japonica) using restriction-site associated DNA sequencing

MI Haqani, M Nakano, AJ Nagano, Y Nakamura… - Scientific Reports, 2023 - nature.com
This study was designed to perform an association analysis and identify SNP markers
associated with production traits of Japanese quail using restriction-site-associated DNA …

[HTML][HTML] Integration of selection signatures and multi-trait GWAS reveals polygenic genetic architecture of carcass traits in beef cattle

Q Niu, T Zhang, L Xu, T Wang, Z Wang, B Zhu, L Zhang… - Genomics, 2021 - Elsevier
Carcass merits are widely considered as economically important traits affecting beef
production in the beef cattle industry. However, the genetic basis of carcass traits remains to …

ELOVL gene family plays a virtual role in response to breeding selection and lipid deposition in different tissues in chicken (Gallus gallus)

D Wang, X Li, P Zhang, Y Cao, K Zhang, P Qin, Y Guo… - BMC genomics, 2022 - Springer
Background Elongases of very long chain fatty acids (ELOVLs), a family of first rate-limiting
enzymes in the synthesis of long-chain fatty acids, play an essential role in the biosynthesis …

[HTML][HTML] Chicken chromatin accessibility atlas accelerates epigenetic annotation of birds and gene fine-mapping associated with growth traits

XN Zhu, YZ Wang, C Li, HY Wu, R Zhang… - Zoological …, 2023 - ncbi.nlm.nih.gov
The development of epigenetic maps, such as the ENCODE project in humans, provides
resources for gene regulation studies and a reference for research of disease-related …

[HTML][HTML] Research Note: Phenotypic trends for the multigenerational advanced intercross of the Virginia body weight lines of chickens

PB Siegel, CF Honaker, L Andersson - Poultry Science, 2024 - Elsevier
Random samples from generation S 41 of the Virginia high and low 8-week body weight
lines formed the base population for producing a multigenerational reciprocal intercross …

RNA‐Seq‐based discovery of genetic variants and allele‐specific expression of two layer lines and broiler chicken

MA Iqbal, F Hadlich, H Reyer, M Oster… - Evolutionary …, 2023 - Wiley Online Library
Recent advances in the selective breeding of broilers and layers have made poultry
production one of the fastest‐growing industries. In this study, a transcriptome variant calling …

Large-scale whole genome sequencing study reveals genetic architecture and key variants for breast muscle weight in native chickens

X Tan, L Liu, X Liu, H Cui, R Liu, G Zhao, J Wen - Genes, 2021 - mdpi.com
Breast muscle weight (BrW) is one of the most important economic traits in chicken, and
directional breeding for that results in both phenotypic and genetic changes. The Jingxing …