Recent advances in predicting and modeling protein–protein interactions

J Durham, J Zhang, IR Humphreys, J Pei… - Trends in biochemical …, 2023 - cell.com
Protein–protein interactions (PPIs) drive biological processes, and disruption of PPIs can
cause disease. With recent breakthroughs in structure prediction and a deluge of genomic …

Mechanisms of reduced flavin transfer in the two-component flavin-dependent monooxygenases

J Sucharitakul, R Tinikul, P Chaiyen - Archives of biochemistry and …, 2014 - Elsevier
Two-component flavin-dependent enzymes are abundant in nature and are involved in a
wide variety of biological reactions. These enzymes consist of a reductase which generates …

Revolutionizing protein–protein interaction prediction with deep learning

J Zhang, J Durham, Q Cong - Current Opinion in Structural Biology, 2024 - Elsevier
Protein–protein interactions (PPIs) are pivotal for driving diverse biological processes, and
any disturbance in these interactions can lead to disease. Thus, the study of PPIs has been …

Algorithmic approaches to protein-protein interaction site prediction

TT Aumentado-Armstrong, B Istrate… - Algorithms for Molecular …, 2015 - Springer
Interaction sites on protein surfaces mediate virtually all biological activities, and their
identification holds promise for disease treatment and drug design. Novel algorithmic …

Structural Basis for the Modulation of the Neuronal Voltage-Gated Sodium Channel NaV1.6 by Calmodulin

VPR Chichili, Y Xiao, J Seetharaman, TR Cummins… - Scientific reports, 2013 - nature.com
The neuronal-voltage gated sodium channel (VGSC), NaV1. 6, plays an important role in
propagating action potentials along myelinated axons. Calmodulin (CaM) is known to …

[PDF][PDF] Structural insights into the molecular mechanism of phytoplasma immunodominant membrane protein

CY Liu, HP Cheng, CP Lin, YT Liao, TP Ko, SJ Lin… - IUCrJ, 2024 - journals.iucr.org
Immunodominant membrane protein (IMP) is a prevalent membrane protein in phytoplasma
and has been confirmed to be an F-actin-binding protein. However, the intricate molecular …

Lipopolysaccharide and statin-mediated immune-responsive protein networks revealed in macrophages through affinity purification spacer-arm controlled cross …

AHM Kamal, JK Chakrabarty, SM Chowdhury - Molecular Omics, 2023 - pubs.rsc.org
Toll-like receptor 4 (TLR4), a pattern recognition receptor, is activated by
lipopolysaccharides (LPS) and induces the MyD88 pathway, which subsequently produces …

Complementary uses of small angle X-ray scattering and X-ray crystallography

MC Pillon, A Guarné - Biochimica et Biophysica Acta (BBA)-Proteins and …, 2017 - Elsevier
Most proteins function within networks and, therefore, protein interactions are central to
protein function. Although stable macromolecular machines have been extensively studied …

Structures and Functions of the Human GATOR1 Complex

I Ivanova, K Shen - Macromolecular Protein Complexes V: Structure and …, 2024 - Springer
Eukaryotic cells coordinate available nutrients with their growth through the mechanistic
target of rapamycin complex 1 (mTORC1) pathway, in which numerous evolutionarily …

[PDF][PDF] Die Rolle der Hematopoietic Progenitor Kinase 1 (HPK1) in neutrophilen Granulozyten

M Winkelmann - 2022 - edoc.ub.uni-muenchen.de
Calor (Erwärmung), Tumor (Schwellung), Dolor (Schmerz) und Functio Laesa (
Funktionseinschränkung)[20]. Die ersten Zellen, die dabei in das Gewebe auswandern, um …