Epigenetics, fragmentomics, and topology of cell-free DNA in liquid biopsies

YMD Lo, DSC Han, P Jiang, RWK Chiu - Science, 2021 - science.org
BACKGROUND Liquid biopsies that are based on analysis of cell-free DNA from plasma
offer diagnostic information that is otherwise accessible conventionally through invasive …

Current and future perspectives of liquid biopsies in genomics-driven oncology

E Heitzer, IS Haque, CES Roberts… - Nature Reviews …, 2019 - nature.com
Precision oncology seeks to leverage molecular information about cancer to improve patient
outcomes. Tissue biopsy samples are widely used to characterize tumours but are limited by …

Characteristics, origin, and potential for cancer diagnostics of ultrashort plasma cell-free DNA

I Hudecova, CG Smith, R Hänsel-Hertsch… - Genome …, 2022 - genome.cshlp.org
Current evidence suggests that plasma cell-free DNA (cfDNA) is fragmented around a mode
of 166 bp. Data supporting this view has been mainly acquired through the analysis of …

The potential of liquid biopsies for the early detection of cancer

E Heitzer, S Perakis, JB Geigl, MR Speicher - NPJ precision oncology, 2017 - nature.com
Precision medicine refers to the choosing of targeted therapies based on genetic data. Due
to the increasing availability of data from large-scale tumor genome sequencing projects …

[HTML][HTML] Size profile of cell-free DNA: A beacon guiding the practice and innovation of clinical testing

J Shi, R Zhang, J Li, R Zhang - Theranostics, 2020 - ncbi.nlm.nih.gov
Cell-free DNA (cfDNA) has pioneered the development of noninvasive prenatal testing and
liquid biopsy, its emerging applications include organ transplantation, autoimmune …

Enrichment of short mutant cell-free DNA fragments enhanced detection of pancreatic cancer

X Liu, L Liu, Y Ji, C Li, T Wei, X Yang, Y Zhang, X Cai… - …, 2019 - thelancet.com
Background Analysis of cell-free DNA (cfDNA) is promising for broad applications in clinical
settings, but with significant bias towards late-stage cancers. Although recent studies have …

An enrichment method to increase cell-free fetal DNA fraction and significantly reduce false negatives and test failures for non-invasive prenatal screening: a feasibility …

P Hu, D Liang, Y Chen, Y Lin, F Qiao, H Li… - Journal of translational …, 2019 - Springer
Background Noninvasive prenatal screening (NIPS) based on cell-free fetal DNA (cffDNA)
has rapidly been applied into clinic. However, the reliability of this method largely depends …

Cell‐free fetal DNA coming in all sizes and shapes

RWK Chiu, YMD Lo - Prenatal Diagnosis, 2021 - Wiley Online Library
Cell‐free fetal DNA analysis has an established role in prenatal assessments. It serves as a
source of fetal genetic material that is accessible non‐invasively from maternal blood …

Selecting short DNA fragments in plasma improves detection of circulating tumour DNA

F Mouliere, AM Piskorz, D Chandrananda, E Moore… - BioRxiv, 2017 - biorxiv.org
Introductory paragraph Non-invasive analysis of cancer genomes using cell-free circulating
tumour DNA (ctDNA) is being widely implemented for clinical indications. The sensitivity for …

A review on the impact of single-stranded library preparation on plasma cell-free diversity for cancer detection

JC Cheng, N Swarup, DTW Wong, D Chia - Frontiers in Oncology, 2024 - frontiersin.org
In clinical oncology, cell-free DNA (cfDNA) has shown immense potential in its ability to
noninvasively detect cancer at various stages and monitor the progression of therapy …