Harnessing genomics to fast-track genetic improvement in aquaculture

RD Houston, TP Bean, DJ Macqueen… - Nature Reviews …, 2020 - nature.com
Aquaculture is the fastest-growing farmed food sector and will soon become the primary
source of fish and shellfish for human diets. In contrast to crop and livestock production …

Genomic selection in aquaculture: application, limitations and opportunities with special reference to marine shrimp and pearl oysters

KR Zenger, MS Khatkar, DB Jones… - Frontiers in …, 2019 - frontiersin.org
Within aquaculture industries, selection based on genomic information (genomic selection)
has the profound potential to change genetic improvement programs and production …

Stacks: an analysis tool set for population genomics

J Catchen, PA Hohenlohe, S Bassham… - Molecular …, 2013 - Wiley Online Library
Massively parallel short‐read sequencing technologies, coupled with powerful software
platforms, are enabling investigators to analyse tens of thousands of genetic markers. This …

Breaking RAD: An evaluation of the utility of restriction site‐associated DNA sequencing for genome scans of adaptation

DB Lowry, S Hoban, JL Kelley, KE Lotterhos, LK Reed… - 2017 - Wiley Online Library
Understanding how and why populations evolve is of fundamental importance to molecular
ecology. Restriction site‐associated DNA sequencing (RAD seq), a popular reduced …

Applications of genotyping by sequencing in aquaculture breeding and genetics

D Robledo, C Palaiokostas, L Bargelloni… - Reviews in …, 2018 - Wiley Online Library
Selective breeding is increasingly recognized as a key component of sustainable production
of aquaculture species. The uptake of genomic technology in aquaculture breeding has …

Special features of RAD Sequencing data: implications for genotyping

JW Davey, T Cezard, P Fuentes‐Utrilla… - Molecular …, 2013 - Wiley Online Library
Restriction site‐associated DNA Sequencing (RAD‐Seq) is an economical and efficient
method for SNP discovery and genotyping. As with other sequencing‐by‐synthesis …

Recent advances of genome mapping and marker‐assisted selection in aquaculture

GH Yue - Fish and fisheries, 2014 - Wiley Online Library
Aquaculture is the fastest growing sector in agriculture. Substantial genetic gains have been
achieved in a few cultured species using conventional selective breeding approaches …

Genetics and genomics of disease resistance in salmonid species

JM Yáñez, RD Houston, S Newman - Frontiers in genetics, 2014 - frontiersin.org
Infectious and parasitic diseases generate large economic losses in salmon farming. A
feasible and sustainable alternative to prevent disease outbreaks may be represented by …

Development and validation of a high density SNP genotyping array for Atlantic salmon (Salmo salar)

RD Houston, JB Taggart, T Cézard, M Bekaert… - BMC genomics, 2014 - Springer
Background Dense single nucleotide polymorphism (SNP) genotyping arrays provide
extensive information on polymorphic variation across the genome of species of interest …

Viral encephalopathy and retinopathy in aquaculture: a review

QK Doan, M Vandeputte, B Chatain… - Journal of fish …, 2017 - Wiley Online Library
Viral encephalopathy and retinopathy (VER), otherwise known as viral nervous necrosis
(VNN), is a major devastating threat for aquatic animals. Betanodaviruses have been …