Born to run: control of transcription elongation by RNA polymerase II

FX Chen, ER Smith, A Shilatifard - Nature reviews Molecular cell …, 2018 - nature.com
The dynamic regulation of transcription elongation by RNA polymerase II (Pol II) is an
integral part of the implementation of gene expression programmes during development. In …

CDK9: a signaling hub for transcriptional control

CW Bacon, I D'Orso - Transcription, 2019 - Taylor & Francis
ABSTRACT Cyclin-dependent kinase 9 (CDK9) is critical for RNA Polymerase II (Pol II)
transcription initiation, elongation, and termination in several key biological processes …

Transposable elements and their KRAB-ZFP controllers regulate gene expression in adult tissues

G Ecco, M Cassano, A Kauzlaric, J Duc, A Coluccio… - Developmental cell, 2016 - cell.com
KRAB-containing zinc finger proteins (KRAB-ZFPs) are early embryonic controllers of
transposable elements (TEs), which they repress with their cofactor KAP1 through histone …

The molecular basis for human immunodeficiency virus latency

U Mbonye, J Karn - Annual review of virology, 2017 - annualreviews.org
Although potent combination antiretroviral therapy can effectively block viral replication in
the host, human immunodeficiency virus (HIV) persists due to the existence of latent but …

Selective Mediator dependence of cell-type-specifying transcription

MG Jaeger, B Schwalb, SD Mackowiak, T Velychko… - Nature …, 2020 - nature.com
The Mediator complex directs signals from DNA-binding transcription factors to RNA
polymerase II (Pol II). Despite this pivotal position, mechanistic understanding of Mediator in …

The arms race between KRAB–zinc finger proteins and endogenous retroelements and its impact on mammals

M Bruno, M Mahgoub… - Annual Review of …, 2019 - annualreviews.org
Nearly half of the human genome consists of endogenous retroelements (EREs) and their
genetic remnants, a small fraction of which carry the potential to propagate in the host …

CDK9 keeps RNA polymerase II on track

S Egloff - Cellular and Molecular Life Sciences, 2021 - Springer
Abstract Cyclin-dependent kinase 9 (CDK9), the kinase component of positive transcription
elongation factor b (P-TEFb), is essential for transcription of most protein-coding genes by …

KAP1/TRIM28: transcriptional activator and/or repressor of viral and cellular programs?

K Randolph, U Hyder, I D'Orso - Frontiers in Cellular and Infection …, 2022 - frontiersin.org
Several transcriptional and epigenetic regulators have been functionally linked to the control
of viral and cellular gene expression programs. One such regulator is Krüppel-associated …

Human TFIIH kinase CDK7 regulates transcription-associated chromatin modifications

CC Ebmeier, B Erickson, BL Allen, MA Allen, H Kim… - Cell reports, 2017 - cell.com
CDK7 phosphorylates the RNA polymerase II (pol II) C-terminal domain CTD and activates
the P-TEFb-associated kinase CDK9, but its regulatory roles remain obscure. Here, using …

PAF1 regulation of promoter-proximal pause release via enhancer activation

FX Chen, P Xie, CK Collings, K Cao, Y Aoi… - Science, 2017 - science.org
Gene expression in metazoans is regulated by RNA polymerase II (Pol II) promoter-proximal
pausing and its release. Previously, we showed that Pol II–associated factor 1 (PAF1) …