Current challenges and best-practice protocols for microbiome analysis

R Bharti, DG Grimm - Briefings in bioinformatics, 2021 - academic.oup.com
Analyzing the microbiome of diverse species and environments using next-generation
sequencing techniques has significantly enhanced our understanding on metabolic …

Correlation and association analyses in microbiome study integrating multiomics in health and disease

Y Xia - Progress in molecular biology and translational …, 2020 - Elsevier
Correlation and association analyses are one of the most widely used statistical methods in
research fields, including microbiome and integrative multiomics studies. Correlation and …

Forest tree growth is linked to mycorrhizal fungal composition and function across Europe

MA Anthony, TW Crowther, S Van Der Linde… - The ISME …, 2022 - academic.oup.com
Most trees form symbioses with ectomycorrhizal fungi (EMF) which influence access to
growth-limiting soil resources. Mesocosm experiments repeatedly show that EMF species …

Environmental risk of multi-year polythene film mulching and its green solution in arid irrigation region

ZY Zhao, PY Wang, XB Xiong, YB Wang, R Zhou… - Journal of Hazardous …, 2022 - Elsevier
Environmental risk of multi-year polythene film mulching (PM) was evaluated and
investigated. The location observation following 19-year (2000–2018) PM in irrigated region …

Reductions in anti-inflammatory gut bacteria are associated with depression in a sample of young adults

RT Liu, AD Rowan-Nash, AE Sheehan… - Brain, behavior, and …, 2020 - Elsevier
We assessed the gut microbiota of 90 American young adults, comparing 43 participants
with major depressive disorder (MDD) and 47 healthy controls, and found that the MDD …

Depletion of acetate-producing bacteria from the gut microbiota facilitates cognitive impairment through the gut-brain neural mechanism in diabetic mice

H Zheng, P Xu, Q Jiang, Q Xu, Y Zheng, J Yan, H Ji… - Microbiome, 2021 - Springer
Background Modification of the gut microbiota has been reported to reduce the incidence of
type 1 diabetes mellitus (T1D). We hypothesized that the gut microbiota shifts might also …

Dysbiosis of the gut microbiome in lung cancer

H Zhuang, L Cheng, Y Wang, YK Zhang… - Frontiers in cellular …, 2019 - frontiersin.org
Lung cancer (LC) is one of the most serious malignant tumors, which has the fastest growing
morbidity and mortality worldwide. A role of the lung microbiota in LC pathogenesis has …

Analysis of microbial diversity and functional differences in different types of high‐temperature Daqu

Y Wang, W Cai, W Wang, N Shu, Z Zhang… - Food science & …, 2021 - Wiley Online Library
Bacterial communities that enrich in high‐temperature Daqu are important for the Chinese
maotai‐flavor liquor brewing process. However, the bacterial communities in three different …

[HTML][HTML] Microbial functional assemblages predicted by the FAPROTAX analysis are impacted by physicochemical properties, but C, N and S cycling genes are not in …

Z Yang, C Peng, H Cao, J Song, B Gong, L Li… - Ecological …, 2022 - Elsevier
Mangroves and their global significance in climate change based on the storage of blue
carbon and release of CO 2, CH 4, and N 2 O have attracted great attention. Microbial …

Effects of polystyrene microplastics on the agronomic traits and rhizosphere soil microbial community of highland barley

P Xiang, W Liao, Z Xiong, W Xiao, Y Luo, L Peng… - Science of The Total …, 2024 - Elsevier
This study investigated the influence of polystyrene microplastics (MPs) with two different
particle sizes (< 1 mm, 1–5 mm) and three concentrations (1 g/m 2, 10 g/m 2, 50 g/m 2), as …