Microbial diversity in extreme environments

WS Shu, LN Huang - Nature Reviews Microbiology, 2022 - nature.com
A wide array of microorganisms, including many novel, phylogenetically deeply rooted taxa,
survive and thrive in extreme environments. These unique and reduced-complexity …

A new perspective on microbes formerly known as nitrite-oxidizing bacteria

H Daims, S Lücker, M Wagner - Trends in microbiology, 2016 - cell.com
Nitrite-oxidizing bacteria (NOB) catalyze the second step of nitrification, nitrite oxidation to
nitrate, which is an important process of the biogeochemical nitrogen cycle. NOB were …

Disentangling mechanisms that mediate the balance between stochastic and deterministic processes in microbial succession

F Dini-Andreote, JC Stegen… - Proceedings of the …, 2015 - National Acad Sciences
Ecological succession and the balance between stochastic and deterministic processes are
two major themes within microbial ecology, but these conceptual domains have mostly …

The growing tree of Archaea: new perspectives on their diversity, evolution and ecology

PS Adam, G Borrel, C Brochier-Armanet… - The ISME …, 2017 - academic.oup.com
The Archaea occupy a key position in the Tree of Life, and are a major fraction of microbial
diversity. Abundant in soils, ocean sediments and the water column, they have crucial roles …

Complex archaea that bridge the gap between prokaryotes and eukaryotes

A Spang, JH Saw, SL Jørgensen… - Nature, 2015 - nature.com
The origin of the eukaryotic cell remains one of the most contentious puzzles in modern
biology. Recent studies have provided support for the emergence of the eukaryotic host cell …

Genomic exploration of the diversity, ecology, and evolution of the archaeal domain of life

A Spang, EF Caceres, TJG Ettema - Science, 2017 - science.org
BACKGROUND Archaea have been recognized as a major domain of life besides Bacteria
and Eukarya for about 40 years. Much of the pioneering research on archaeal organisms …

Community genomic analyses constrain the distribution of metabolic traits across the Chloroflexi phylum and indicate roles in sediment carbon cycling

LA Hug, CJ Castelle, KC Wrighton, BC Thomas… - Microbiome, 2013 - Springer
Background Sediments are massive reservoirs of carbon compounds and host a large
fraction of microbial life. Microorganisms within terrestrial aquifer sediments control buried …

Genomic and enzymatic evidence for acetogenesis among multiple lineages of the archaeal phylum Bathyarchaeota widespread in marine sediments

Y He, M Li, V Perumal, X Feng, J Fang, J Xie… - Nature …, 2016 - nature.com
Members of the archaeal phylum Bathyarchaeota are widespread and abundant in the
energy-deficient marine subsurface sediments. However, their life strategies have remained …

Archaea in biogeochemical cycles

P Offre, A Spang, C Schleper - Annual review of microbiology, 2013 - annualreviews.org
Archaea constitute a considerable fraction of the microbial biomass on Earth. Like Bacteria
they have evolved a variety of energy metabolisms using organic and/or inorganic electron …

High-resolution spatial and genomic characterization of coral-associated microbial aggregates in the coral Stylophora pistillata

N Wada, MT Hsu, K Tandon, SSY Hsiao, HJ Chen… - Science …, 2022 - science.org
Bacteria commonly form aggregates in a range of coral species [termed coral-associated
microbial aggregates (CAMAs)], although these structures remain poorly characterized …