General mechanisms leading to persister formation and awakening

D Wilmaerts, EM Windels, N Verstraeten, J Michiels - Trends in Genetics, 2019 - cell.com
All bacterial populations harbor a small fraction of transiently antibiotic-tolerant cells called
persisters. These phenotypic variants compromise successful antibiotic treatment because …

RNA repair: hiding in plain sight

S Shuman - Annual Review of Genetics, 2023 - annualreviews.org
Enzymes that phosphorylate, dephosphorylate, and ligate RNA 5′ and 3′ ends were
discovered more than half a century ago and were eventually shown to repair purposeful …

Evolutionary and functional classification of the CARF domain superfamily, key sensors in prokaryotic antivirus defense

KS Makarova, A Timinskas, YI Wolf… - Nucleic acids …, 2020 - academic.oup.com
Abstract CRISPR-associated Rossmann Fold (CARF) and S MODS-a ssociated and fused to
v arious e ffector d omains (SAVED) are key components of c yclic oligonucleotide-b ased a …

Chemoproteomic discovery of a human RNA ligase

Y Yuan, FM Stumpf, LA Schlor, OP Schmidt… - Nature …, 2023 - nature.com
RNA ligases are present across all forms of life. While enzymatic RNA ligation between 5′-
PO4 and 3′-OH termini is prevalent in viruses, fungi, and plants, such RNA ligases are yet …

Generation of 2′, 3′-cyclic phosphate-containing RNAs as a hidden layer of the transcriptome

M Shigematsu, T Kawamura, Y Kirino - Frontiers in genetics, 2018 - frontiersin.org
Cellular RNA molecules contain phosphate or hydroxyl ends. A 2′, 3′-cyclic phosphate
(cP) is one of the 3′-terminal forms of RNAs mainly generated from RNA cleavage by …

A new family of bacterial ribosome hibernation factors

K Helena-Bueno, MY Rybak, CL Ekemezie, R Sullivan… - Nature, 2024 - nature.com
To conserve energy during starvation and stress, many organisms use hibernation factor
proteins to inhibit protein synthesis and protect their ribosomes from damage,. In bacteria …

[HTML][HTML] For the greater good: Programmed cell death in bacterial communities

SH Peeters, MI de Jonge - Microbiological research, 2018 - Elsevier
For a long a time programmed cell death was thought to be a unique characteristic of higher
eukaryotes, but evidence has accumulated showing that programmed cell death is a …

[HTML][HTML] An RNA repair operon regulated by damaged tRNAs

KJ Hughes, X Chen, AM Burroughs, L Aravind… - Cell reports, 2020 - cell.com
Many bacteria contain an RNA repair operon, encoding the RtcB RNA ligase and the RtcA
RNA cyclase, that is regulated by the RtcR transcriptional activator. Although RtcR contains …

Molecular architecture of the human tRNA ligase complex

A Kroupova, F Ackle, I Asanović, S Weitzer… - Elife, 2021 - elifesciences.org
RtcB enzymes are RNA ligases that play essential roles in tRNA splicing, unfolded protein
response, and RNA repair. In metazoa, RtcB functions as part of a five-subunit tRNA ligase …

Toxins of prokaryotic toxin-antitoxin systems with sequence-specific endoribonuclease activity

H Masuda, M Inouye - Toxins, 2017 - mdpi.com
Protein translation is the most common target of toxin-antitoxin system (TA) toxins. Sequence-
specific endoribonucleases digest RNA in a sequence-specific manner, thereby blocking …