Graphics processing units in bioinformatics, computational biology and systems biology

MS Nobile, P Cazzaniga, A Tangherloni… - Briefings in …, 2017 - academic.oup.com
Abstract Several studies in Bioinformatics, Computational Biology and Systems Biology rely
on the definition of physico-chemical or mathematical models of biological systems at …

Mechanocellular models of epithelial morphogenesis

AG Fletcher, F Cooper… - … Transactions of the …, 2017 - royalsocietypublishing.org
Embryonic epithelia achieve complex morphogenetic movements, including in-plane
reshaping, bending and folding, through the coordinated action and rearrangement of …

[HTML][HTML] Systems-based approaches toward wound healing

A Buganza Tepole, E Kuhl - Pediatric research, 2013 - nature.com
Wound healing in the pediatric patient is of utmost clinical and social importance because
hypertrophic scarring can have aesthetic and psychological sequelae, from early childhood …

Modelling epidermis homoeostasis and psoriasis pathogenesis

H Zhang, W Hou, L Henrot… - Journal of The …, 2015 - royalsocietypublishing.org
We present a computational model to study the spatio-temporal dynamics of epidermis
homoeostasis under normal and pathological conditions. The model consists of a population …

[HTML][HTML] Multi-scale computational study of the mechanical regulation of cell mitotic rounding in epithelia

A Nematbakhsh, W Sun, PA Brodskiy… - PLoS computational …, 2017 - journals.plos.org
Mitotic rounding during cell division is critical for preventing daughter cells from inheriting an
abnormal number of chromosomes, a condition that occurs frequently in cancer cells. Cells …

[HTML][HTML] Simulation frameworks for morphogenetic problems

S Tanaka - Computation, 2015 - mdpi.com
Morphogenetic modelling and simulation help to understand the processes by which the
form and shapes of organs (organogenesis) and organisms (embryogenesis) emerge. This …

[HTML][HTML] A 3D self-organizing multicellular epidermis model of barrier formation and hydration with realistic cell morphology based on EPISIM

T Sütterlin, E Tsingos, J Bensaci, GN Stamatas… - Scientific reports, 2017 - nature.com
The epidermis and the stratum corneum (SC) as its outermost layer have evolved to protect
the body from evaporative water loss to the environment. To morphologically represent the …

[HTML][HTML] A multiscale chemical-mechanical model predicts impact of morphogen spreading on tissue growth

A Ramezani, S Britton, R Zandi, M Alber… - NPJ systems biology …, 2023 - nature.com
The exact mechanism controlling cell growth remains a grand challenge in developmental
biology and regenerative medicine. The Drosophila wing disc tissue serves as an ideal …

Ontogeny of collective behaviour

IB Muratore, S Garnier - Philosophical Transactions of the …, 2023 - royalsocietypublishing.org
During their lifetime, superorganisms, like unitary organisms, undergo transformations that
change the machinery of their collective behaviour. Here, we suggest that these …

Modelling platelet–blood flow interaction using the subcellular element Langevin method

CR Sweet, S Chatterjee, Z Xu… - Journal of The …, 2011 - royalsocietypublishing.org
In this paper, a new three-dimensional modelling approach is described for studying fluid–
viscoelastic cell interaction, the subcellular element Langevin (SCEL) method, with cells …