Genome-scale metabolic modeling enables in-depth understanding of big data
Genome-scale metabolic models (GEMs) enable the mathematical simulation of the
metabolism of archaea, bacteria, and eukaryotic organisms. GEMs quantitatively define a …
metabolism of archaea, bacteria, and eukaryotic organisms. GEMs quantitatively define a …
Metabolomics and complementary techniques to investigate the plant phytochemical cosmos
Covering: up to 2021 Plants and their associated microbial communities are known to
produce millions of metabolites, a majority of which are still not characterized and are …
produce millions of metabolites, a majority of which are still not characterized and are …
The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants …
For over 10 years, ModelSEED has been a primary resource for the construction of draft
genome-scale metabolic models based on annotated microbial or plant genomes. Now …
genome-scale metabolic models based on annotated microbial or plant genomes. Now …
Systematic multi-omics integration (MOI) approach in plant systems biology
Across all facets of biology, the rapid progress in high-throughput data generation has
enabled us to perform multi-omics systems biology research. Transcriptomics, proteomics …
enabled us to perform multi-omics systems biology research. Transcriptomics, proteomics …
High-throughput plant phenotyping: a role for metabolomics?
RD Hall, JC D'Auria, ACS Ferreira, Y Gibon… - Trends in Plant …, 2022 - cell.com
High-throughput (HTP) plant phenotyping approaches are developing rapidly and are
already helping to bridge the genotype–phenotype gap. However, technologies should be …
already helping to bridge the genotype–phenotype gap. However, technologies should be …
Plant and algal lipidomes: Analysis, composition, and their societal significance
Plants and algae play a crucial role in the earth's ecosystems. Through photosynthesis they
convert light energy into chemical energy, capture CO2 and produce oxygen and energy …
convert light energy into chemical energy, capture CO2 and produce oxygen and energy …
Life at the borderlands: microbiomes of interfaces critical to One Health
Microbiomes are foundational components of the environment that provide essential
services relating to food security, carbon sequestration, human health, and the overall well …
services relating to food security, carbon sequestration, human health, and the overall well …
Elucidating plant-microbe-environment interactions through omics-enabled metabolic modelling using synthetic communities
With a growing world population and increasing frequency of climate disturbance events, we
are in dire need of methods to improve plant productivity, resilience, and resistance to both …
are in dire need of methods to improve plant productivity, resilience, and resistance to both …
Unraveling the genome of a high yielding Colombian sugarcane hybrid
JH Trujillo-Montenegro… - Frontiers in Plant …, 2021 - frontiersin.org
Recent developments in High Throughput Sequencing (HTS) technologies and
bioinformatics, including improved read lengths and genome assemblers allow the …
bioinformatics, including improved read lengths and genome assemblers allow the …
Advances in genome-scale metabolic modeling toward microbial community analysis of the human microbiome
A genome-scale metabolic model (GEM) represents metabolic pathways of an organism in a
mathematical form and can be built using biochemistry and genome annotation data. GEMs …
mathematical form and can be built using biochemistry and genome annotation data. GEMs …