Temporal dynamic methods for bulk RNA-Seq time series data

VKS Oh, RW Li - Genes, 2021 - mdpi.com
Dynamic studies in time course experimental designs and clinical approaches have been
widely used by the biomedical community. These applications are particularly relevant in …

Validation of genotyping by sequencing using transcriptomics for diversity and application of genomic selection in tetraploid potato

BM Caruana, LW Pembleton, F Constable… - Frontiers in plant …, 2019 - frontiersin.org
Potato is an important food crop due to its increasing consumption, and as a result, there is
demand for varieties with improved production. However, the current status of breeding for …

Lens orientalis Contributes Quantitative Trait Loci and Candidate Genes Associated With Ascochyta Blight Resistance in Lentil

RHR Dadu, I Bar, R Ford, P Sambasivam… - Frontiers in Plant …, 2021 - frontiersin.org
Australian lentil production is affected by several major biotic constraints including
Ascochyta blight (AB), caused by Ascochyta lentis, a devastating fungal disease. Cultivation …

Application of genomics approaches for the improvement in ascochyta blight resistance in chickpea

S Sudheesh, HV Kahrood, S Braich, N Dron, K Hobson… - Agronomy, 2021 - mdpi.com
Advancements in high-throughput genotyping and sequencing technologies are enabling
the development of a vast range of genomic tools and resources for a new revolution in plant …

Characterization of genetic and allelic diversity amongst cultivated and wild lentil accessions for germplasm enhancement

R Dissanayake, S Braich, NOI Cogan, K Smith… - Frontiers in …, 2020 - frontiersin.org
Intensive breeding of cultivated lentil has resulted in a relatively narrow genetic base, which
limits the options to increase crop productivity through selection. Assessment of genetic …

Assessment of low-coverage nanopore long read sequencing for SNP genotyping in doubled haploid canola (Brassica napus L.)

MM Malmberg, GC Spangenberg, HD Daetwyler… - Scientific Reports, 2019 - nature.com
Despite the high accuracy of short read sequencing (SRS), there are still issues with
attaining accurate single nucleotide polymorphism (SNP) genotypes at low sequencing …

Developing an integrated genomic selection approach beyond biomass for varietal protection and nutritive traits in perennial ryegrass (Lolium perenne L.)

MM Malmberg, C Smith, P Thakur, MC Drayton… - Theoretical and Applied …, 2023 - Springer
Key message Breeding target traits can be broadened to include nutritive value and plant
breeder's rights traits in perennial ryegrass by using in-field regression-based spectroscopy …

Mapping of Two New Rust Resistance Genes Uvf-2 and Uvf-3 in Faba Bean

U Ijaz, S Sudheesh, S Kaur, A Sadeque, H Bariana… - Agronomy, 2021 - mdpi.com
Faba bean is gaining attention in Australia as a rotation grain legume where most of the
country's produce is exported. Rust, caused by Uromyces viciae-fabae, is a major constraint …

Genotyping by sequencing advancements in barley

NR Rajendran, N Qureshi… - Frontiers in plant …, 2022 - frontiersin.org
Barley is considered an ideal crop to study cereal genetics due to its close relationship with
wheat and diploid ancestral genome. It plays a crucial role in reducing risks to global food …

Evaluation and recommendations for routine genotyping using skim whole genome re-sequencing in canola

MM Malmberg, DM Barbulescu, MC Drayton… - Frontiers in Plant …, 2018 - frontiersin.org
Whole genome sequencing offers genome wide, unbiased markers, and inexpensive library
preparation. With the cost of sequencing decreasing rapidly, many plant genomes of modest …